Tacr003818.1
Basic Information
- Insect
- Tachystola acroxantha
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963506565.1
- Location
- OY735873.1:1753905-1772451[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 9.2e-78 2.4e-73 247.6 21.1 1 296 119 403 119 406 0.87 2 3 1 2.6e+04 -6.0 14.9 1 44 403 446 403 470 0.67 3 3 0.28 7.4e+03 -3.6 7.2 136 232 442 475 427 482 0.34
Sequence Information
- Coding Sequence
- ATGGGCAGGCGCACCGGGCTCGCTACGCCTGGCAATAGTGACGAGGAAAGCGGGGACGCCTTCACCGATGGCGACTTCGATGATTCCGACCACGAAACACCCCAAATTAACGACAAATCTCCCATTCCAGTCATCGAAACCGTCAACATGGATGTAAAGAACGCAAATATTGACACAAACGGCTCCAATGGACACGTTAACGGTTCAAGTGATCATAAACTAAATGGCTTCAAGAATGGCATTGGACATTCTAGTGAGGATAACCTTAGCGATGGAGCTTCAGACGTTCGGAGGGATTCACATACGGAACTAAATCCTTCTATCGTCGGAATACTTGGGGGTCAACAGAATCACGCTGAGCAGCGCCTGGCTGCGCGTCGCGCCGCGCGTGCGGAGGCGCGCGAGATACGCATGCGCGAGCTGGAGCGCCAGCAGCGCGAGCAGGAGGACCATGCGGACAAGGCGTACGACATGTACTCAGAGACGGTGACGCGGCGCGGGGTCCCGCGGCTCGCGGGGCTCAGTCCCGCCGTGCTGCATTCGCCCAGGCGGAGCTCGGAGGACTCGGCGGACGATGCGTTTAGCATCAAGGACCTTAGGCACGAGCTAAAGGAGGTCGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGATAATGAAAAGGCCGCGCTCGGCTACCAGCTGGAGCTACTCAAGGACCGGATAGAGGAGCTGCACGAGGAGTACGCGCAGCTACAGCGAGAGCACAGAGAGAAATGCTCGGCACACGAGCGTTTAAAACGCGAGCACGCGTCGCTCGAGCGTGAGTTGACGGGCGCGCGCGACGCGGTGCGGGCGCGCGACGCGGCCGCGCACGCCGCGGGGTTCGCCTTCGTGGAGGCGGCGGGGGTCGTTGGGGAGGGCGAGCCGGCGGGCGAGGGGTTCGGAAGCGTGCCGCCACTGGCGCTCGTGTCGCACCAGTCTGAACAGATGCTTAACGACGCCGGAGAGGGGACTTTAGACGTGCGGTTGCAGAAACTGTTAGCTAGTAAGCTCGCGCTTGAGTCCGAGGTGCGCAAGCTGAAGCTGCAGCTCAACGACGAGCGCGCCGCCAGGCAAAACGGCGTCACGAACCACCACGATCAGGAGTATGAGAACGAATTGGAAACCCTCCGGAAGTCAGTAGCGGAGGCGAAGGGGCGCGCGGCACGAGCCGAGGCGGAGGCGGCGTTACAAGCGGCCGCGGTGGCGCGCCTCGAGGCGCAGGTGTCGCGGCTGCGGGCGAGGCAGGACCATCAGGACGAGAGCGAGGAGCAGCTCAAGCAGGAGAAGAGGCGGCTGCAGAGAGAGGCACGGGAAGCCCTCAACCGAGTCGAAGAGTTGGAGACGGAGAACGGCCATCTGACGAAACGGCTCGACAAACTCAAGAACGCCAAGTCTGCGCTGCTGAAAGACCTGTGA
- Protein Sequence
- MGRRTGLATPGNSDEESGDAFTDGDFDDSDHETPQINDKSPIPVIETVNMDVKNANIDTNGSNGHVNGSSDHKLNGFKNGIGHSSEDNLSDGASDVRRDSHTELNPSIVGILGGQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYSETVTRRGVPRLAGLSPAVLHSPRRSSEDSADDAFSIKDLRHELKEVEEKFRKAMILNAQLDNEKAALGYQLELLKDRIEELHEEYAQLQREHREKCSAHERLKREHASLERELTGARDAVRARDAAAHAAGFAFVEAAGVVGEGEPAGEGFGSVPPLALVSHQSEQMLNDAGEGTLDVRLQKLLASKLALESEVRKLKLQLNDERAARQNGVTNHHDQEYENELETLRKSVAEAKGRAARAEAEAALQAAAVARLEAQVSRLRARQDHQDESEEQLKQEKRRLQREAREALNRVEELETENGHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00674310; iTF_00994369; iTF_00027771; iTF_01090792; iTF_00026870;
- 90% Identity
- -
- 80% Identity
- -