Aals008979.1
Basic Information
- Insect
- Agonopterix alstromeriana
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963924505.1
- Location
- OZ004669.1:17020354-17039606[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-77 5.4e-73 246.4 23.3 1 297 133 423 133 425 0.87 2 2 1 2.5e+04 -6.3 16.3 1 49 422 469 422 500 0.65
Sequence Information
- Coding Sequence
- ATGGGCAGGCGGTCCGAGGTGGTGACACCTGACAACAGTGACGAGGAAAGCGGTGAAAACTTCACCGACGGTGACTTCGGCGACACCGACGATGATCTCATTGATGTCGCTGAAACAGAACCCACTGACGAATCTAATCTTCCAGTAACAGAAACAATAAATATGGATGTTAAGAATGTTAATGCAGATACGAACGGTAACTCTAATGATAATAGCTTTGATGGACACGTTAATGGCTCGAAAGATCAACCCAAGGTTAACGGACGCAAGAATAGTGTCGGACAATCAAGCGATTTGGGAAACCATAGTAATGTCGGTACTACAGAATTGCGAAGAGATTCCCATGGGGATCTGAATCCGTCGATTGTTGGAATTCTAGGTGGTCAGCAGAGTCATgcAGAGCAACGGTTGGCGGCGCGACGAGCGGCGCGAGCGGAGGCGCGGGAGATACGCATGCGCGAGCTTGAACGTCAGCAGCGGGAACAAGAAGACCATGCTGATAAAGCGTATGATATGTACACAGAGACGGTGACCCGCCGCGGTGTGCCACGACTAGCAGCGATGAGTCCGGCGGTGCTGCACTCCCCGCGACGAAGCTCCGAAGACTCCGCGGACGACACCTTCAGCATCAAGGACCTTAGGCATGAGCTGAAGGAGGTAGAAGAAAAGTTCCGTAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTCGAGCTGCTCAAGGACAGGATAGAGGAACTGCACGAGGAACACGCACAGTTACAGCGAGAACACAGAGAAAAATGCTCAACACACGAGCGTTTAAAACGCGAGCATGCTTCGTTAGAACGTGAACTATCCGCCGCGCGGGACGCGGTGCGGGCGCGCGACGCGGCCGCCACGCGCGCCGGCTTCGCGTTCGTCGAGGCCGCGGGGGTGGAGGGCGgcgagggggagggggagggggtgTCGCCGGGGGAGGCGTGCGGGGTGGTCCCCGCGCTAGCGCTCGTGAGCCACCAGTCAGAGCAGCTGCTTAATGATGCCGGGGAGGGCACCCTGGACGTGCGGTTGCAGAAGCTCCTCTCGTCGAAGCTGGGGCTGGAGTCGGATGTGCGCAAACTGAAGCTGCAGCTGAACGAGGAGCGCGCCGCGAGGCAGAACGGCGTCGCCAACCATCACGACCAGGAATACGAGAACGAACTGGAAACACTCCGCAAATCAGTAGCCGATGCAAAAGGAAGAGCAGCGCGAGCGGAAGCCGAAGCGGCGCTACAAGCAGCCGCCGTAGCGCGCCTCGAGGCACAAGTATCAAGACTACGCGCTCGACAAGACCACCAGGACGAGCACGAGGAGCAACTGAAGCAGGAGCGACGGAAGCTGCAGAGAGAGGCGAGGGAAGCTCTCAACCGAGTAGAAGAATTAGAAACCGAGAACAGTCATCTAACGAAACGTCTAGATAAGCTGAAGAACGCCAAGTCAGCGCTTCTGAAGGACCTGTGA
- Protein Sequence
- MGRRSEVVTPDNSDEESGENFTDGDFGDTDDDLIDVAETEPTDESNLPVTETINMDVKNVNADTNGNSNDNSFDGHVNGSKDQPKVNGRKNSVGQSSDLGNHSNVGTTELRRDSHGDLNPSIVGILGGQQSHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYTETVTRRGVPRLAAMSPAVLHSPRRSSEDSADDTFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEHAQLQREHREKCSTHERLKREHASLERELSAARDAVRARDAAATRAGFAFVEAAGVEGGEGEGEGVSPGEACGVVPALALVSHQSEQLLNDAGEGTLDVRLQKLLSSKLGLESDVRKLKLQLNEERAARQNGVANHHDQEYENELETLRKSVADAKGRAARAEAEAALQAAAVARLEAQVSRLRARQDHQDEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01401311;
- 90% Identity
- iTF_00027771;
- 80% Identity
- -