Scon002819.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Synergus coniferae
Gene Symbol
ZFX
Assembly
GCA_032164275.1
Location
JAUEJJ010000004.1:13611270-13612895[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 2.5 3.1e+02 2.7 2.7 1 23 55 78 55 78 0.81
2 14 4.5e-06 0.00057 20.8 0.6 3 23 158 179 156 179 0.96
3 14 0.00017 0.021 15.9 0.2 2 23 192 213 192 213 0.98
4 14 3.5e-05 0.0044 18.0 1.9 2 23 216 237 215 237 0.96
5 14 0.0049 0.61 11.3 0.3 1 23 243 265 243 265 0.95
6 14 8.3e-06 0.001 20.0 4.5 2 23 272 293 271 294 0.95
7 14 0.038 4.7 8.5 3.7 5 23 307 325 306 325 0.97
8 14 7.5e-06 0.00094 20.1 1.5 3 23 332 353 331 353 0.97
9 14 0.0034 0.43 11.8 0.3 2 23 369 389 368 389 0.97
10 14 1.2e-05 0.0015 19.5 1.2 1 20 395 414 395 417 0.92
11 14 2.8e-05 0.0035 18.3 2.7 1 23 425 447 425 447 0.99
12 14 0.00079 0.098 13.8 3.2 1 23 453 475 453 475 0.97
13 14 3.8e-06 0.00047 21.1 4.8 1 23 481 503 481 503 0.99
14 14 0.00013 0.016 16.3 7.3 1 23 509 531 509 532 0.96

Sequence Information

Coding Sequence
ATGTCCACATCATATGACCTAATGGCTCGGGAAACTTGGGATGAATCCGAAGGTTCGGATAATGAGATAGGAGGATCTCTTTTGGATAGCCGATCTTTAGCGACACATTTTACATCTAGTCTGTTTTTAGATCGTGATAGGAAAACGCCGACGCggcgaatttttaaatgctcaTTCTGCACTGAAGTTTTTGAATGTCCCAAGGAACGCAGAGTTCATAGTACAACTGTTCACAAAGATGCTGGTCCTAGTAATAGTAGAGATCCTATTCAACAGACTGAAatgaaagatataaaattattggatgGACGTATGAACATGTTTGATGACATTTTCGTGGCAGGATATCAACAAACATATCACCAACCACTGTTACATCAGCTTCAACCACCTCAACAATTAGATGTAGGAAAATCTGACAATGATAAAAAGGttgataatttaagaattccGACCTCAATGGAcattatttgcaatatttgtAATCAAAGTTTTAATAGTGAGAAGTCGTTACAAATTCATCAGAGAAGAATGCATATTAAAGAATCTGTAAAACGCGTTAGGGAAAATGCCAAGTGCCAGATTTGTAATCAGGAATTTCCTTCGGTTAGTTTATTTAAtgcacatttaaaaatacatccTTTAGAATGCGGTCAGTGtggtaaatatttctataggaaacaaaattttaaattacatgtgAAGCGACACCTTGGAATAAAACCCTTTCCATGTTCAGTATGCGACAAAGCTTTTCTTACTAAGCAAAAGCTTGATGAACACACTAACGGACATACTGGCAATGCTCCCGTCAAATGCAATTTGTGTAATGAAACTTTTCGAAGATACTCGAACTTAACTCAACATAAGAACAGACATCATTTGCACGTGAAGAAAAAGTTGAAGGATTACATATGTCACTGTGGTGAAGTATTTCATACAAAGAAGAAACTTGCGTGGCATAAAGAGACGCATGATGAGAAACCAAAAGCTTGTACATATTGTAACGAAAGGTTTATTCACATGGCTAGCCTAACTCGTCATATGCGACGTGCTCACAATCGAAGATTTGTTCCTGATGCTCAAAGGGAAAGTGAAAATGTAGAGTGTCCGATATGTAAATGCATTTACTTGCGGTCTTCTTTAGCTGTACATATGAGAGTGCATAATGGTGAGCGGCCATACGAGTGTCAAGTTTGCTCTAAATCTTTTAGTACGAAATGGAATTTGCAATTGCATAAATGGACGCATGCAGCGAGAAGTACTAAACcatttaaatgtaatcaatGCAGTGCTGCCTTTTATCGACATAGTGACTACACGGCACATATGAATTCTCACAGAAATGTACGACCATACACGTGCAATTATTGTGGAGCTCAGTTTATACGAAAATACAATTGTCTCAGGCATGTTAAGGaacatgaagaaaataaagcgTATACATGTGATACATGTAACAAAACTTTTCATAGATCGTATTACCTCAAAGAACATTTGCGTGTACATTCGGGTTTAAAACCATATACGTGTCATATTTGTGGTAAAACGAGTAGTACTAAATCCAATCACAATAAGCATGTAAGAATTCATCACGCGCGAGAACCTGTAAATACCGAAAATTAA
Protein Sequence
MSTSYDLMARETWDESEGSDNEIGGSLLDSRSLATHFTSSLFLDRDRKTPTRRIFKCSFCTEVFECPKERRVHSTTVHKDAGPSNSRDPIQQTEMKDIKLLDGRMNMFDDIFVAGYQQTYHQPLLHQLQPPQQLDVGKSDNDKKVDNLRIPTSMDIICNICNQSFNSEKSLQIHQRRMHIKESVKRVRENAKCQICNQEFPSVSLFNAHLKIHPLECGQCGKYFYRKQNFKLHVKRHLGIKPFPCSVCDKAFLTKQKLDEHTNGHTGNAPVKCNLCNETFRRYSNLTQHKNRHHLHVKKKLKDYICHCGEVFHTKKKLAWHKETHDEKPKACTYCNERFIHMASLTRHMRRAHNRRFVPDAQRESENVECPICKCIYLRSSLAVHMRVHNGERPYECQVCSKSFSTKWNLQLHKWTHAARSTKPFKCNQCSAAFYRHSDYTAHMNSHRNVRPYTCNYCGAQFIRKYNCLRHVKEHEENKAYTCDTCNKTFHRSYYLKEHLRVHSGLKPYTCHICGKTSSTKSNHNKHVRIHHAREPVNTEN