Sand011955.1
Basic Information
- Insect
- Synanthedon andrenaeformis
- Gene Symbol
- -
- Assembly
- GCA_936447275.2
- Location
- CAKZFQ020000721.1:60178-64714[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3e-06 0.00019 22.1 3.6 2 23 169 190 168 190 0.98 2 15 0.00024 0.015 16.1 0.3 1 23 193 215 193 215 0.98 3 15 1.5e-05 0.00092 19.9 1.6 1 23 221 243 221 243 0.99 4 15 0.69 43 5.2 0.1 5 19 250 264 248 264 0.95 5 15 0.024 1.5 9.8 0.2 1 23 273 295 273 295 0.94 6 15 2.5e-05 0.0016 19.2 1.0 1 23 301 323 301 323 0.97 7 15 1.6e-06 9.8e-05 23.0 1.0 2 23 356 378 355 378 0.95 8 15 1.6e-05 0.001 19.8 2.5 2 23 386 408 385 408 0.94 9 15 7e-06 0.00044 20.9 1.4 2 23 416 438 415 438 0.94 10 15 3.7e-05 0.0023 18.7 1.1 2 23 446 468 445 468 0.92 11 15 0.00077 0.048 14.5 0.5 2 23 479 501 479 501 0.93 12 15 8.4e-05 0.0052 17.5 0.9 2 23 508 530 507 530 0.96 13 15 8.8e-06 0.00055 20.6 0.9 2 23 536 558 535 558 0.94 14 15 2.6e-05 0.0016 19.2 3.7 2 23 566 588 565 588 0.93 15 15 2.2e-05 0.0013 19.4 1.0 2 23 595 617 594 617 0.94
Sequence Information
- Coding Sequence
- ATGGCTGCAACATTAAAGCAAACACCGTTATGCAGATGTTGTCACAAGTATGGTGTATTCAAGAGTCTATTTTCCGACTATATCTACAACGAGAATGAGGTTGAAAATTATTCTCAGATGTTGCAAGATACATTCGGAATCTCATTTGAACCCTCTGAACATGACAAAATATATACAATATGTGACGAGTGTATTGAAAAACTACGAATCTCAACGGATTTGAAGATTGCCTGTGGGAAAATTATTAAACAGGAGCCATTAATTGAAAACGATGTCCCAATTAAAATAGAAAAATGTTGGAGTTATGCTTGCAGCAGTAAAGAAGGACCGTTAATGGCAGTCGACGTCAAAGTTCAAAGAGAAGAGACTGCCAATGATGAACACAGAGACATAGCCATAAATAGCGTATTAGATGAACAGTCCGATGAAGATGTCACAATTGAAAAGAGCAGAAAGGAAACAGATGCAACCTTGTGTGAATCTGAGAACGACAGACACGAGAATAAATGTAATATTTGCAATAGAACTTTTAGATTCAAAAAGTACCTAGAAAGTCACATGAAGACGCACTTTAGATATCGCTGTGAAGTATGCAATAGAGATTATCAGAGCAAAGGTGAATTGCTTAGACACGAAATGGTGCATAAGGATGAGAGAAAGTTTAAGTGCTCAATATGTAATAATGGGTTTAAACTGAGCAGAAGTTTGAAGGCTCACATGAAAACACACAAGGATGAAACACCGCAGGAGTGCAGCCGGAAATTCAATGTCAAGAAAAGCTTATTGAGGCATCCTCAAAACATGGGTGTAAACAAGTACAGTTGCCAGTATTGTGATAAAGGATTTTTGATGAAAGGTAGATTGGTTGCACATGAAATGATACACACGGGTGTAAAACAATACGAGTGCGAAAAATGCAATAAATCGTTTAGAAGCAAAGATGTTTTGGTAAGTCATAATAAAGTGCATGAGAAACATGAGCCTAACAATCGTAACCTGCGTGAAAATAGATTCAAAAGAAGAGAAAATTTCAATAGACAAATGTTGACGCATGCTGGGATAATAGAGTGCGACGTTTGCAAGAAGACATTTCAACAAAAACAGAATTTAAGAAGGCACATGAAGGCTGTACATTTGGGCCTAAAGTCACCCATTCAGTGCGACATTTGCAAGAAAACATTTAAGCACAAGGATTATATGCGCCAGCACATGTCGGCTTTACATTTGGGCCTTAAGCCACCCAGTCAGTGTGAAATTTGCAAGAAGACATTTAAATACAAGCAATATCTACGTAACCACATGTCGGCTGTACATTTGGGCCTTAACCCACCCACTCAGTGCGACATTTGCAAGAAGACATTTAAATATAAACAGAGTTTAAGCAGGCACGTGTCGGCTGTACATTCAGGCTTTAAGCCAACGCCCACTCCCAATGAGTGCGACATTTGCATGAAGACATTTAAATACAAACAGAGTTTAAGCAGGCACATTTCGGCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCAAAAATACATTTAAATACAAGGAAAATATACGCAAGCACATGTTGGTTGTACATTTGGGCTTTAAGTTAAAGTGTGACATATGCAAGAAGACATTTAAATACAAGCAAGGTCTACGCAGCCACATGTTGGCTGAACATTTGGGCTTTAAGCCACACACTCAGTGCGATATTTGCAAAACGACATTTAAACACAAACGGAGTTTAAACAGGCACATGTCGGATCTACATTCGGACCTTCCACCCACTCAGTGCGATATTTGCAGGAAAACATTTAAATCCAAGGATACTATACGCAAGCACATGTTGGCTGTACATTTGGGCTTGAAGCGAACATGCATTAAAAGAAAAGTTATTTAA
- Protein Sequence
- MAATLKQTPLCRCCHKYGVFKSLFSDYIYNENEVENYSQMLQDTFGISFEPSEHDKIYTICDECIEKLRISTDLKIACGKIIKQEPLIENDVPIKIEKCWSYACSSKEGPLMAVDVKVQREETANDEHRDIAINSVLDEQSDEDVTIEKSRKETDATLCESENDRHENKCNICNRTFRFKKYLESHMKTHFRYRCEVCNRDYQSKGELLRHEMVHKDERKFKCSICNNGFKLSRSLKAHMKTHKDETPQECSRKFNVKKSLLRHPQNMGVNKYSCQYCDKGFLMKGRLVAHEMIHTGVKQYECEKCNKSFRSKDVLVSHNKVHEKHEPNNRNLRENRFKRRENFNRQMLTHAGIIECDVCKKTFQQKQNLRRHMKAVHLGLKSPIQCDICKKTFKHKDYMRQHMSALHLGLKPPSQCEICKKTFKYKQYLRNHMSAVHLGLNPPTQCDICKKTFKYKQSLSRHVSAVHSGFKPTPTPNECDICMKTFKYKQSLSRHISAVHSDLPPTQCDICKNTFKYKENIRKHMLVVHLGFKLKCDICKKTFKYKQGLRSHMLAEHLGFKPHTQCDICKTTFKHKRSLNRHMSDLHSDLPPTQCDICRKTFKSKDTIRKHMLAVHLGLKRTCIKRKVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01386025; iTF_01386026; iTF_01386386; iTF_01386387; iTF_01386388; iTF_01386013; iTF_01386027;
- 90% Identity
- iTF_01386387;
- 80% Identity
- iTF_01386387;