Sand011955.1
Basic Information
- Insect
- Synanthedon andrenaeformis
- Gene Symbol
- -
- Assembly
- GCA_936447275.2
- Location
- CAKZFQ020000721.1:60178-64714[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.54 2.1e+03 -0.7 0.2 26 45 169 188 159 193 0.83 2 11 0.021 82 3.8 0.0 22 45 218 241 214 248 0.86 3 11 0.00019 0.74 10.4 0.1 27 49 357 379 354 382 0.90 4 11 0.078 3.1e+02 2.0 0.0 23 49 383 409 380 413 0.87 5 11 0.029 1.2e+02 3.3 0.1 24 48 414 438 411 443 0.90 6 11 0.031 1.2e+02 3.2 0.0 24 48 444 468 440 475 0.87 7 11 0.026 1e+02 3.5 0.0 24 48 477 501 472 505 0.88 8 11 0.0019 7.6 7.1 0.0 24 48 506 530 498 533 0.85 9 11 0.31 1.2e+03 0.1 0.0 27 49 537 559 535 564 0.86 10 11 0.0052 21 5.7 0.1 26 45 566 585 560 592 0.84 11 11 0.076 3e+02 2.0 0.0 24 48 593 617 585 620 0.83
Sequence Information
- Coding Sequence
- ATGGCTGCAACATTAAAGCAAACACCGTTATGCAGATGTTGTCACAAGTATGGTGTATTCAAGAGTCTATTTTCCGACTATATCTACAACGAGAATGAGGTTGAAAATTATTCTCAGATGTTGCAAGATACATTCGGAATCTCATTTGAACCCTCTGAACATGACAAAATATATACAATATGTGACGAGTGTATTGAAAAACTACGAATCTCAACGGATTTGAAGATTGCCTGTGGGAAAATTATTAAACAGGAGCCATTAATTGAAAACGATGTCCCAATTAAAATAGAAAAATGTTGGAGTTATGCTTGCAGCAGTAAAGAAGGACCGTTAATGGCAGTCGACGTCAAAGTTCAAAGAGAAGAGACTGCCAATGATGAACACAGAGACATAGCCATAAATAGCGTATTAGATGAACAGTCCGATGAAGATGTCACAATTGAAAAGAGCAGAAAGGAAACAGATGCAACCTTGTGTGAATCTGAGAACGACAGACACGAGAATAAATGTAATATTTGCAATAGAACTTTTAGATTCAAAAAGTACCTAGAAAGTCACATGAAGACGCACTTTAGATATCGCTGTGAAGTATGCAATAGAGATTATCAGAGCAAAGGTGAATTGCTTAGACACGAAATGGTGCATAAGGATGAGAGAAAGTTTAAGTGCTCAATATGTAATAATGGGTTTAAACTGAGCAGAAGTTTGAAGGCTCACATGAAAACACACAAGGATGAAACACCGCAGGAGTGCAGCCGGAAATTCAATGTCAAGAAAAGCTTATTGAGGCATCCTCAAAACATGGGTGTAAACAAGTACAGTTGCCAGTATTGTGATAAAGGATTTTTGATGAAAGGTAGATTGGTTGCACATGAAATGATACACACGGGTGTAAAACAATACGAGTGCGAAAAATGCAATAAATCGTTTAGAAGCAAAGATGTTTTGGTAAGTCATAATAAAGTGCATGAGAAACATGAGCCTAACAATCGTAACCTGCGTGAAAATAGATTCAAAAGAAGAGAAAATTTCAATAGACAAATGTTGACGCATGCTGGGATAATAGAGTGCGACGTTTGCAAGAAGACATTTCAACAAAAACAGAATTTAAGAAGGCACATGAAGGCTGTACATTTGGGCCTAAAGTCACCCATTCAGTGCGACATTTGCAAGAAAACATTTAAGCACAAGGATTATATGCGCCAGCACATGTCGGCTTTACATTTGGGCCTTAAGCCACCCAGTCAGTGTGAAATTTGCAAGAAGACATTTAAATACAAGCAATATCTACGTAACCACATGTCGGCTGTACATTTGGGCCTTAACCCACCCACTCAGTGCGACATTTGCAAGAAGACATTTAAATATAAACAGAGTTTAAGCAGGCACGTGTCGGCTGTACATTCAGGCTTTAAGCCAACGCCCACTCCCAATGAGTGCGACATTTGCATGAAGACATTTAAATACAAACAGAGTTTAAGCAGGCACATTTCGGCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCAAAAATACATTTAAATACAAGGAAAATATACGCAAGCACATGTTGGTTGTACATTTGGGCTTTAAGTTAAAGTGTGACATATGCAAGAAGACATTTAAATACAAGCAAGGTCTACGCAGCCACATGTTGGCTGAACATTTGGGCTTTAAGCCACACACTCAGTGCGATATTTGCAAAACGACATTTAAACACAAACGGAGTTTAAACAGGCACATGTCGGATCTACATTCGGACCTTCCACCCACTCAGTGCGATATTTGCAGGAAAACATTTAAATCCAAGGATACTATACGCAAGCACATGTTGGCTGTACATTTGGGCTTGAAGCGAACATGCATTAAAAGAAAAGTTATTTAA
- Protein Sequence
- MAATLKQTPLCRCCHKYGVFKSLFSDYIYNENEVENYSQMLQDTFGISFEPSEHDKIYTICDECIEKLRISTDLKIACGKIIKQEPLIENDVPIKIEKCWSYACSSKEGPLMAVDVKVQREETANDEHRDIAINSVLDEQSDEDVTIEKSRKETDATLCESENDRHENKCNICNRTFRFKKYLESHMKTHFRYRCEVCNRDYQSKGELLRHEMVHKDERKFKCSICNNGFKLSRSLKAHMKTHKDETPQECSRKFNVKKSLLRHPQNMGVNKYSCQYCDKGFLMKGRLVAHEMIHTGVKQYECEKCNKSFRSKDVLVSHNKVHEKHEPNNRNLRENRFKRRENFNRQMLTHAGIIECDVCKKTFQQKQNLRRHMKAVHLGLKSPIQCDICKKTFKHKDYMRQHMSALHLGLKPPSQCEICKKTFKYKQYLRNHMSAVHLGLNPPTQCDICKKTFKYKQSLSRHVSAVHSGFKPTPTPNECDICMKTFKYKQSLSRHISAVHSDLPPTQCDICKNTFKYKENIRKHMLVVHLGFKLKCDICKKTFKYKQGLRSHMLAEHLGFKPHTQCDICKTTFKHKRSLNRHMSDLHSDLPPTQCDICRKTFKSKDTIRKHMLAVHLGLKRTCIKRKVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01386029;
- 90% Identity
- iTF_01386029;
- 80% Identity
- iTF_01386029;