Sand011954.1
Basic Information
- Insect
- Synanthedon andrenaeformis
- Gene Symbol
- -
- Assembly
- GCA_936447275.2
- Location
- CAKZFQ020000721.1:44312-52312[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 3.3e-06 0.0002 22.0 3.6 2 23 169 190 168 190 0.98 2 17 0.00026 0.016 16.0 0.3 1 23 193 215 193 215 0.98 3 17 3.1 1.9e+02 3.2 4.0 11 23 226 238 221 238 0.84 4 17 0.75 47 5.1 0.1 5 19 245 259 243 259 0.95 5 17 0.026 1.6 9.7 0.2 1 23 268 290 268 290 0.94 6 17 2.8e-05 0.0017 19.1 1.0 1 23 296 318 296 318 0.97 7 17 6.5e-05 0.004 17.9 2.0 2 23 351 373 350 373 0.95 8 17 1.8e-05 0.0011 19.6 1.8 2 23 381 403 380 403 0.94 9 17 7.7e-06 0.00048 20.8 1.4 2 23 411 433 410 433 0.94 10 17 7.9e-06 0.00049 20.8 0.5 2 23 441 463 440 463 0.94 11 17 0.00012 0.0074 17.1 1.2 1 23 471 494 471 494 0.95 12 17 6.1e-05 0.0038 18.0 1.8 2 23 502 523 501 523 0.97 13 17 2.3e-05 0.0014 19.3 0.9 2 23 530 552 529 552 0.94 14 17 0.00081 0.05 14.4 0.3 2 23 563 585 562 585 0.96 15 17 2.8e-05 0.0017 19.1 1.1 2 23 593 615 592 615 0.94 16 17 4.9e-05 0.0031 18.3 1.0 2 23 622 644 622 644 0.94 17 17 2.6e-06 0.00016 22.3 1.3 2 23 650 672 649 672 0.97
Sequence Information
- Coding Sequence
- ATGGCTGCAACATTAAAGCAAACACCGTTATGCAGATGTTGTCACAAGTATGGTGTATTCAAGAGTCTATTTTCCGACTATATCTATAACGAGAATGAGGTTGAAAATTATTCTCAGATGTTGCAAGATACATTCGGAATCTCATTTGAACCCTCTGAACATGACAAAATATATACAATATGTGACGAGTGTATTGAAAAACTACGAATCTCAACGGATTTGAAGATTGCCTGTGGGAAAATTATTAAACAGGAGCCATTAATTGAAAACGATGTCCCAATTAAAATAGAAAAATGTTGGAGTTATGCTTGCAGCAGTAAAGAAGGACCGTTAATGGCAGTCGACGTCAAAGTTCAAAGAGAAGAGACTGCCAATGATGAACACAGAGACATAGCCATAAATAGCGTATTAGATGAACAGTCCGATGAAGATGTCACAATTGAAAAGAGCAGAAAGGAAACAGATGCAACCTTGTGTGAATCTGAGAACGACAGACACGAGAATAAATGTAATATTTGCAATAGAACTTTTAGATTCAAAAAGTACCTAGAAAGTCACATGAAGACGCACTTTAGATATCGCTGTGAAGTATGCAATAGAGATTATCAGAGCAAAGGTGAATTGCTTAGACACGAAATGGTGCATAAGGATGAGAGAAAGTTTAAGTGCTCAATATGTAATAATGGAAGTTTGAAGGCTCACATGAAAACACACAAGGATGAAACACCGCAGGAGTGCAGCCGGAAATTCAATGTCAAGAAAAGCTTATTGAGGCATCCTCAAAACATGGGTGTAAACAAGTACAGTTGCCAGTATTGTGATAAAGGATTTTTGATGAAAGGTAGATTGGTTGCACATGAAATGATACACACGGGTGTAAAACAATACGAGTGCGAAAAATGCAATAAATCGTTTAGAAGCAAAGATGTTTTGGTAAGTCATAATAAAGTGCATGAGAAACATGAGCCTAACAATCGTAACCTGCGTGAAAATAGATTCAAAAGAAGAGAAAATTTAAATAGACAAATGTTGACGCATGCTGCGATAATAGAGTGCGACGTTTGCAAGAAGACATTTCAACACACACAGAGTTTAAGAAGGCACATGAAGGCTGTACATTTGGGCCTTAAGTCACCCATTCAATGCGACATTTGCAAGAAAACATTTAAACACAAGGAATATATACAAAGGCACATGTCGGCTGTACATTTGGGACTTAATCCACCCAGTCAGTGTGAAATTTGCAAGAAGACATTTAAATACAAGCAATATCTACGTAACCACATGTCGGCTGTACATTTGGGCCTTAAGCCACCCACTCAGTGTGACATTTGCAAGAAAACATTTACATCCAAGGATTATATAGAAAGGCACATGTTGGCTGTACATTTGGGCTTTAAGCCAAATGCCTTTGAATGCAACATTTGCAAGAATACATTTAAATACAAACGAAATGTAAGCAGGCACATGTTGGCTGTACATTTGGGCCTCAAGCCACCCACTCAATGCGATATTTGCAAGAAGACATTTAATAAACAGAGTTTAAGCAAGCACATGTCGACTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCAAAAAGACATTTAAATACAAGCAAAGTCTACGCGGTCACATGTTGGCTGTACATTTGGGCTTTAAGCCAACGCCCACTACCACTGAGTGCGTCATTTGCAAGATGGTATTTAAATACAAGCAAGGTCTAGACAGCCACATGTTGACTGAACATTTGGGCCTTAAGCCACCCACTCAGTGCGATATTTGCAAAAAGATATTTAAATATAAACAGAGTTTAAGCAAGCACATGTCGGCTGTACATTCGGATCTTCCACCCCCTCAGTGCGACATTTGCAGGAAGACATTTAAATCCAAGGAGACTATACGCAAGCACATGTTGGCTGTACATTTGAGCTTTAAGTTAAAGTGTGACATATGCAAGAAGACATTTGAATACAAGCAGAGTTTAAGCAGGCACATGTTGACTGTACATTTGGGCTTGAAGCGAACACGCACTAAATGA
- Protein Sequence
- MAATLKQTPLCRCCHKYGVFKSLFSDYIYNENEVENYSQMLQDTFGISFEPSEHDKIYTICDECIEKLRISTDLKIACGKIIKQEPLIENDVPIKIEKCWSYACSSKEGPLMAVDVKVQREETANDEHRDIAINSVLDEQSDEDVTIEKSRKETDATLCESENDRHENKCNICNRTFRFKKYLESHMKTHFRYRCEVCNRDYQSKGELLRHEMVHKDERKFKCSICNNGSLKAHMKTHKDETPQECSRKFNVKKSLLRHPQNMGVNKYSCQYCDKGFLMKGRLVAHEMIHTGVKQYECEKCNKSFRSKDVLVSHNKVHEKHEPNNRNLRENRFKRRENLNRQMLTHAAIIECDVCKKTFQHTQSLRRHMKAVHLGLKSPIQCDICKKTFKHKEYIQRHMSAVHLGLNPPSQCEICKKTFKYKQYLRNHMSAVHLGLKPPTQCDICKKTFTSKDYIERHMLAVHLGFKPNAFECNICKNTFKYKRNVSRHMLAVHLGLKPPTQCDICKKTFNKQSLSKHMSTVHSDLPPTQCDICKKTFKYKQSLRGHMLAVHLGFKPTPTTTECVICKMVFKYKQGLDSHMLTEHLGLKPPTQCDICKKIFKYKQSLSKHMSAVHSDLPPPQCDICRKTFKSKETIRKHMLAVHLSFKLKCDICKKTFEYKQSLSRHMLTVHLGLKRTRTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01386029;
- 90% Identity
- -
- 80% Identity
- -