Sand011957.1
Basic Information
- Insect
- Synanthedon andrenaeformis
- Gene Symbol
- -
- Assembly
- GCA_936447275.2
- Location
- CAKZFQ020000721.1:78778-83277[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.51 2e+03 -0.6 0.7 26 46 74 94 67 100 0.82 2 11 0.011 42 4.7 0.0 22 46 123 147 119 153 0.87 3 11 0.00016 0.62 10.6 0.1 27 49 262 284 259 287 0.90 4 11 0.064 2.5e+02 2.3 0.0 23 49 288 314 285 318 0.87 5 11 0.024 95 3.6 0.1 24 48 319 343 316 348 0.90 6 11 0.031 1.2e+02 3.3 0.1 24 48 349 373 346 380 0.87 7 11 0.021 83 3.8 0.0 24 48 382 406 375 410 0.88 8 11 0.0016 6.2 7.4 0.0 24 48 411 435 403 438 0.85 9 11 0.24 9.4e+02 0.4 0.0 27 49 442 464 439 469 0.86 10 11 0.0085 33 5.1 0.1 26 45 471 490 466 497 0.84 11 11 0.071 2.8e+02 2.1 0.1 24 48 498 522 492 525 0.83
Sequence Information
- Coding Sequence
- ATGGCTGCAACATTAAAGCAAACACCGTTATGCAGATGTTGTCACAAGTATGGTGTATTCAAGAGTCTATTTTCCGACTATATCTACAACGAGAATGAGGTTGAAAATTATTCTCAGATGTTGCAAGATACATTCGGAATCTCATCCCTTACAGAACGACACAGTGAATATCAGCATTTGTGCTGTTGTGTTTCGGTGAAGAACGACAGACACGAGAATAAATGCAATATTTGCAATAGAACTTTTAGATTCAAAAAGTACCTAGAAAGTCACATGAAGACGCACTTTAGACATCGCTGTGAAGTATGCAATAGAGATTATCAGAGCAAAGGTGAATTGCTTAGACACGAAATGGTGCATAAGGATGAGAGAAAGTTTAAGTGCTCGATATGTAATAATGGGTTTACACTGAGCAGAAGTTTGAAGGCTCACATGGAAACACACAAGGATGAAACACCGCAGGAGTGCGGCCGGAAATTCAATGTCAAGAAAAGCTTATTGAGGCATCCTCAAAACATGGGTGTAAACAAGTACAGTTGCCAGTATTGTGATAAAGGATTTATGATGAAAGGTAGATTGGTTGCACATGAAATGATACACACGGACGTAAAACAATACGAGTGCGAAAAATGCAATAAATCGTTTAGAAGCAAAGATGTTTTGATAAGTCATAATAAAGTGCATGAGAAACATGAGCCACACAATTTTAACCTGCGTGAAAATAGATTCAAAAGAAGAGAAAATTTCAATAGACAAATGTTGACGCATGCTGGGATAATAGAGTGCGACGTTTGCAAGAAGACATTTCAACAAAAACAGAATTTAAGAAGGCACATGAAGGCTGTACATTTGGGCCTAAAGTCACCCATTCAGTGCGACATTTGCAAGAAAACATTTAAGCACAAGGATTATATGCGCCAGCACATGTCGGCTTTACATTTGGGCCTTAAGCCACCCAGTCAGTGTGAAATTTGCAAGAAGACATTTAAATACAAGCAATATCTACGTAACCACATGTCGGCTGTACATTTGGGCCTTAACCCACCCACTCAGTGCGACATTTGCAAGAAGACATTTAAATATAAACAGAGTTTAAGCAGGCACGTGGCGGCTGTACATTCAGGCTTTAAGCCAACGCCCACTCCCAATGAGTGCGACATTTGCATGAAGACATTTAAATACAAACAGAGTTTAAGCAGGCACATTTCGGCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCAAAAATACATTTAAATACAAGGAAAATATACGCAAGCACATGTTGGTTGTACATTTGGGCTTTAAGTTAAAGTGTGACATATGCAAGAAGACATTTAAATACAAGCAAGGTCTACGCAGCCACATGTTGGCTGAACATTTGGGCTTTAAGCCACACACTCAGTGCGATATTTGCAAAAAGACATTTAAACACAAACGGAGTTTAAACAGGCACATGTCGGATCTACATTCGGACCTTCCACCCACTCAGTGCGATATTTGCAGGAAAACATTTAAATCCAAGGATACTATACGCAAGCACATGTTGGCTGTACATTTGGGCTTGAAGCGAACATGCATTAAAAGAAAAGTTATTTAA
- Protein Sequence
- MAATLKQTPLCRCCHKYGVFKSLFSDYIYNENEVENYSQMLQDTFGISSLTERHSEYQHLCCCVSVKNDRHENKCNICNRTFRFKKYLESHMKTHFRHRCEVCNRDYQSKGELLRHEMVHKDERKFKCSICNNGFTLSRSLKAHMETHKDETPQECGRKFNVKKSLLRHPQNMGVNKYSCQYCDKGFMMKGRLVAHEMIHTDVKQYECEKCNKSFRSKDVLISHNKVHEKHEPHNFNLRENRFKRRENFNRQMLTHAGIIECDVCKKTFQQKQNLRRHMKAVHLGLKSPIQCDICKKTFKHKDYMRQHMSALHLGLKPPSQCEICKKTFKYKQYLRNHMSAVHLGLNPPTQCDICKKTFKYKQSLSRHVAAVHSGFKPTPTPNECDICMKTFKYKQSLSRHISAVHSDLPPTQCDICKNTFKYKENIRKHMLVVHLGFKLKCDICKKTFKYKQGLRSHMLAEHLGFKPHTQCDICKKTFKHKRSLNRHMSDLHSDLPPTQCDICRKTFKSKDTIRKHMLAVHLGLKRTCIKRKVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01386029;
- 90% Identity
- iTF_01386025; iTF_01386026; iTF_01386386; iTF_01386013;
- 80% Identity
- iTF_01386025; iTF_01386026; iTF_01386386; iTF_01386013;