Scau001650.1
Basic Information
- Insect
- Stenodera caucasica
- Gene Symbol
- -
- Assembly
- GCA_037414795.1
- Location
- JAZBGZ010000086.1:20701-22526[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.027 1.9e+02 1.9 0.1 25 45 172 192 164 199 0.79 2 9 0.016 1.2e+02 2.7 0.1 25 52 294 321 278 322 0.86 3 9 0.051 3.7e+02 1.1 0.0 23 54 320 351 316 351 0.85 4 9 0.00065 4.7 7.1 0.0 23 46 348 371 344 377 0.86 5 9 0.0082 59 3.6 0.0 21 48 374 400 370 403 0.87 6 9 0.012 87 3.1 0.1 23 47 432 456 424 463 0.82 7 9 0.051 3.7e+02 1.1 0.1 21 43 458 480 450 485 0.83 8 9 0.00074 5.3 6.9 0.0 21 49 486 514 479 517 0.85 9 9 0.0024 18 5.3 0.1 21 43 514 536 510 541 0.90
Sequence Information
- Coding Sequence
- ATGGAGGATAACAATCTAATGAATATTTGTCGGGCTTGTTTAACAGAAACAGGAACATTTCAGTCAGTATTTATATCAGATGAAGAAACAGGCATTTCAATACATTTATCTGAAATGTTGATGGCTTTTGCTTCAGTACAagTATATTTAGGTGATGGTTTACCAGAACAAATTTGTAAAGATTGTGCCGAACgtacaatacaattttatttatttaagttAAAATGTGAAAATAGTGATCGTTTATTAAGAGAACGTCTAGATAAATCGCCAttaatcaatgatttcaataataaaaagattGATGCAAAAAATGTAGATATTTTAACAGATAATATTGATGTAAAACCTGAAATTATTACCGAAGAATCTCCAAATAAATCGAATCGATTTAATGATGACGAtgaggatgatgatgatgatgatgatatagaCGAAGAcgaagataatgatgatgttctAAATATGTCCGAATACATAACATTggatcaattgaaacaagaagctaaacaatataaatgtgaaatatgctcgaaaatattcaatcgTCAATCAACATTAAATCGTCATATAAAAACACATTCAGCTATAAAAGAATTTGAATGTAGTATATGTAATAAACGTTTTAGTCGTCATGATTTATTGTTACGTCATAAAATAGCGCACGCTATGAAAATGGAgaagaaattagaatttgatagCTTTGAAGTGGAAACTTATTCAAATGATGATACAATCATTATAAAAACAGAAAACGATCTATATCCTTGTAGTgaatgtaatttaatttttattaaaaaagatgaattagagaatcattcaaatgtACAACATTCACAACCTACAGCAACAATAAGAACCATTGATTTATCGAAATCGATTGCATGTAATATATGTTCGAAAACATTCACGAAACAAACCCATCTAAATCGACATATGAAAATACATGATGAAAAGAAACCTTATAATTGTACCTTATGTGGTAAAGGTTTTATACGTTCagaacaattaaataatcataTGAATATGCATTCTGGTATTAAACCACATGTTTGTGCTATTTGTTTCAAAGgtttcaatcaaatatcgaatttaaaGGATCATATGAGAACACATAATGGTGAAAAACCGTTTTTATGCTCAACATGCGGTAAAGGCTTCAATCAATTAGGTAATCTACGACAACATACAATTCGTCATAGCGGTATTAAAGCTCATCTATGTAGTACCTGTGGTAATGGTTTTGCTAGTAAAGGTGAATTATCAGCTCATTTACGAAAACATACTgGTGCACGTCCGTTTGTTTGTCCTGTATGCAATCATGGTTTTACAACATCTAGTTCATTAACAAAACATAAACGTATACATTCAGGTGAAAAACCATATGAATGTGACGTAtgtaaaatgaaattttcacgtTCCGGTATATTAGCAAGACATAAACGTACACATACTGGTGAAAAACCATATGTatgtaaattttgtacaaaagcATTTTCACAATCAAACGATTTAACATCGCATTTACGAATACATACTGGTGAAAAGCCTTATATATGTGATGCTTGCGGACAAGCATTTCGACAAAGTTCAGCATTAAAAACACATAAAAAGACCCATATAGAtcgtaataatagtaatgatatCAAAAATGTACGTCTTATACAAGCGGCAGCATTTTTAAATACTCCATTATGTAATATTTAG
- Protein Sequence
- MEDNNLMNICRACLTETGTFQSVFISDEETGISIHLSEMLMAFASVQVYLGDGLPEQICKDCAERTIQFYLFKLKCENSDRLLRERLDKSPLINDFNNKKIDAKNVDILTDNIDVKPEIITEESPNKSNRFNDDDEDDDDDDDIDEDEDNDDVLNMSEYITLDQLKQEAKQYKCEICSKIFNRQSTLNRHIKTHSAIKEFECSICNKRFSRHDLLLRHKIAHAMKMEKKLEFDSFEVETYSNDDTIIIKTENDLYPCSECNLIFIKKDELENHSNVQHSQPTATIRTIDLSKSIACNICSKTFTKQTHLNRHMKIHDEKKPYNCTLCGKGFIRSEQLNNHMNMHSGIKPHVCAICFKGFNQISNLKDHMRTHNGEKPFLCSTCGKGFNQLGNLRQHTIRHSGIKAHLCSTCGNGFASKGELSAHLRKHTGARPFVCPVCNHGFTTSSSLTKHKRIHSGEKPYECDVCKMKFSRSGILARHKRTHTGEKPYVCKFCTKAFSQSNDLTSHLRIHTGEKPYICDACGQAFRQSSALKTHKKTHIDRNNSNDIKNVRLIQAAAFLNTPLCNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01366497; iTF_00842312; iTF_01566646; iTF_01566418; iTF_00987517; iTF_00987299; iTF_00929760; iTF_00929986; iTF_01022400;
- 90% Identity
- iTF_01366497;
- 80% Identity
- iTF_01366497;