Mdia010706.2
Basic Information
- Insect
- Meloe dianella
- Gene Symbol
- -
- Assembly
- GCA_028455855.1
- Location
- JAPTHL010000048.1:5735313-5737153[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.048 2.2e+02 1.7 0.1 26 45 179 198 171 205 0.80 2 9 0.056 2.5e+02 1.5 0.1 25 52 297 324 278 326 0.84 3 9 0.03 1.3e+02 2.4 0.0 22 54 322 354 317 354 0.87 4 9 0.00095 4.3 7.2 0.0 23 46 351 374 346 380 0.86 5 9 0.014 62 3.4 0.0 21 48 377 403 373 405 0.87 6 9 0.021 95 2.8 0.1 23 46 435 458 429 464 0.81 7 9 0.073 3.3e+02 1.1 0.1 21 43 461 483 452 488 0.82 8 9 0.0019 8.6 6.2 0.0 21 49 489 517 478 520 0.85 9 9 0.0016 7 6.5 0.0 21 45 517 541 515 545 0.91
Sequence Information
- Coding Sequence
- ATGGATGATAATAATACGTTAATGAATATTTGTCGTGTTTGTTTAACTGGAACAGGTGCATTTCAATCCGTATTTATATCAGATGAGGCAACAGGCATATCCATACATTTATCCGAAATGATGATGGCTTTTTCCACAGTACAAGTATATTTAGGTGATGGCTTACCGGAACAAATCTGTAAAGATTGTGCTGAACGTATAATCCAATTCTATTTATTTAAATTGAAATGTGAAGAGAGCGATCGCATATTGAGAGAACGTCTCGGTAAAAGTCCGTTAATAACACGAGAATTCCACAATAAATGTGTTGATGATAAAACTGTTGATATAATAACAGATCATATTGATGTGAAACCGGAGATTGTATCGGAAGAATCCCAAAATAAACGAATTATTAACGACAATGATGATGATGATGACGACGATGATTCTGATGATGATGAAGATACAGACAATACAGACGATAACGATGATCATTCAAAAACATCTGAATATATAACATTAGATCAATTACAACACGAATCGAAACAATACAAATGTGAAATTTGTTCGAAAATCTTTAATCGTCAATCAACATTAAATCGTCATATTAAAACACATTCAGCTATAAAAGAATTTGAATGTAATATATGTAATAAACGTTTCAGTCGTCATGATTTATTACTAAGACATAAAATAGCGCATGCAATGAAAATGGAAAAGAAATTAGAATTTGATAGTTTTGACGTTGAGACATTTACAAATGAAGAAGACACAATTATTATTAAAACCGAAAACGATTTGCATCCGTGCAATGAATGTAATTTATTTTTTATCAAAAAAGACGAATTAGAGAAACATTTGAATGAACAACATTCACAAACAacacaaaccgacataataaaacaaatatcttgtagtgtttgtacgaaaacatttacgaaacaaacacatctaaatcgtcatatgaaaatccatgatgagaagaaaccgtattcgtgtacactgtgtaataaaggttttatacgttcagaacaattaaataatcatatgaatatgcattctggtattaagccgcatgtatgtgctatttgttttaaaggtttcaatcaaatatcaaatttaaaagatcatatgcgtacacataatggtgagaaaccatttctatgttccacatgtggtaaaggtttcaatcagttaggtaatttaagacagcacacagtccgtcatagtggtattaaagcacatctatgcagtacgtgtggtaatggttttgcaagtaaaggtgaattatctgcacatgtacgcaaacatactggtgcacgaccatttgtttgtcctgtatgcaatcatggtttcacaacatcaagttcattaacgaaacataaacgtatacattcaggtgaaaaaccgtatgaatgtgatgtatgcaagatgaaattttcacgttctggtatattagcacgacataaacgtacacatactggtgaaaagccatatatatgtaaattttgtacaaaagcattttcacaatcaaacgatttagtatcgcatttacgtatacatactggtgagaaaccgtacatatgtgatgcttgcggacaagcatttcgacaaagttcagcattaaaaacccacataaaaacacatatagATCGTAGTAATAATGATGTAAAGAATGTACGTTTAATACAGGCTGCTGCAGCATTTTTAAATAATCCAATTTGTAATATTTAA
- Protein Sequence
- MDDNNTLMNICRVCLTGTGAFQSVFISDEATGISIHLSEMMMAFSTVQVYLGDGLPEQICKDCAERIIQFYLFKLKCEESDRILRERLGKSPLITREFHNKCVDDKTVDIITDHIDVKPEIVSEESQNKRIINDNDDDDDDDDSDDDEDTDNTDDNDDHSKTSEYITLDQLQHESKQYKCEICSKIFNRQSTLNRHIKTHSAIKEFECNICNKRFSRHDLLLRHKIAHAMKMEKKLEFDSFDVETFTNEEDTIIIKTENDLHPCNECNLFFIKKDELEKHLNEQHSQTTQTDIIKQISCSVCTKTFTKQTHLNRHMKIHDEKKPYSCTLCNKGFIRSEQLNNHMNMHSGIKPHVCAICFKGFNQISNLKDHMRTHNGEKPFLCSTCGKGFNQLGNLRQHTVRHSGIKAHLCSTCGNGFASKGELSAHVRKHTGARPFVCPVCNHGFTTSSSLTKHKRIHSGEKPYECDVCKMKFSRSGILARHKRTHTGEKPYICKFCTKAFSQSNDLVSHLRIHTGEKPYICDACGQAFRQSSALKTHIKTHIDRSNNDVKNVRLIQAAAAFLNNPICNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01366711;
- 90% Identity
- iTF_00987299;
- 80% Identity
- iTF_00987299;