Ltri001652.2
Basic Information
- Insect
- Lydus trimaculatus
- Gene Symbol
- -
- Assembly
- GCA_037414755.1
- Location
- JAZBGY010000147.1:82490-84327[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.074 1.8e+02 2.1 0.1 25 45 177 197 170 204 0.79 2 9 0.12 2.8e+02 1.4 0.1 25 52 297 324 283 326 0.83 3 9 0.012 28 4.6 0.0 22 54 322 354 317 354 0.87 4 9 0.002 4.6 7.1 0.0 23 46 351 374 347 380 0.86 5 9 0.025 59 3.6 0.0 21 48 377 403 373 406 0.87 6 9 0.04 95 2.9 0.1 23 46 435 458 426 464 0.81 7 9 0.15 3.6e+02 1.1 0.0 21 43 461 483 452 487 0.82 8 9 0.0016 3.7 7.4 0.0 21 52 489 520 482 522 0.86 9 9 0.0074 18 5.3 0.0 21 43 517 539 514 545 0.90
Sequence Information
- Coding Sequence
- atggATGATAATGCTTTATTAAACATTTGTCGAGCTTGTTTAACTGAAACAGGTGTATTTGAATCAGCATTTATATCAAATGAGGCAACAACAGGCATTTCAATCCATCTATCTGAAATGATGATGGCCTTTGCTACAGTACAAGTATATTTAGGTGATGGTTTACCGGAACAAATTTGTAAAGATTGTGCTGAACGTATAatacaattctatttatttaaattaaagtgTGAAGAAAGTGATCGGATATTACGCGAACGTCTCGGTAAATCACCACTAATAACACaagaattcaacaataaaacggTAGATAcgaaaaatgttgataatatcaCAGAAGGTGTTGATGTAAAACCGGAAATTATATCGGAAGAAtctcaaaataaatcaactcgaattgatgatgatgacgacgacgatgatgatgatgatgatgatgatgatgatgatacagaagaagatgatgatgatgataatttggaTATGTCTGATTATATAACTTTGGATCATTTACAAGAAtctaaacaatataaatgtgaaatttgtaCGAAAATCTTTAATCGTCAATCAACATTAAATCGTCATATTAAAACACATTCAGCTGTAAAAGAATTCGAATGTagtatttgtaataaacgttTCAGTCGTCATGATTTATTGTTACGACATAAAATCGCACATGCAATGAAAATGGAGAAGAAACTAGAATTTGATAGTTTTGAAGTTGAATCGTTctctaatgatgatgatgatacgattattatcaaaacagaAAACGATCTATATCCGTGTAGTGagtgtaatttgatttttatcaaaaaagacgaattagaaaatcatcaaaacgaacaacattcaaaaacaacaacaaatgatccAATCAAATCGATATCTTGTAATGTTTGTACAAAAAcgtttacaaaacaaacacatcTAAATCGTCATATGAAAATCCATGATGAAAAGAAACCATATTCGTGTACAATCTGTAATAAAGGTTTTATACGTTcagaacaattaaataatcatatGAATATGCATTCTGGTATAAAACCGCATGTATGTGCGATTTGTTTTAAAGGTTTCaatcaaatatcaaatttaaaagatCATATGCGTACACATAACGGTGAAAAACCATTTCTATGTTCAACATGTGGTAAAGGTTTCAATCAATTAGGTAATTTAAGACAACACACAATCCGTCATAGTGGTATTAAAGCACATCTATGTAGTACTTGTGGTAATGGTTTTGCTAGTAAAGGTGAATTATCTGCACATTTACGCAAACATACCGGTGCACGTCCATTTGTTTGTCCTGTATGTAATCATGGTTTTACAACATCAAGttcattaacaaaacataaacGTATCCATTCCGGTGAAAAACCGTATGAATGTGATGTgtgtaaaatgaaattttcacgTTCTGGTATATTGGCACGTCATAAACGTACACATACTGGTGAAAAACCgtatgtttgtaaattttgtacaaaagcATTTTCACAATCGAATGATTTAACATCACATCTACGTATACATACTGGTGAAAAACCGTATATATGTGATGCTTGTGGACAAGCATTTCGACAAAGTTCAGCAttaaaaacacataaaaaaaCCCATATAGAACGTGGTAATGATGTGAAAAATGTACGTTTAATACAAGCAGCAGCATTTCTAAATAATCCAATATGTAATATTTAA
- Protein Sequence
- MDDNALLNICRACLTETGVFESAFISNEATTGISIHLSEMMMAFATVQVYLGDGLPEQICKDCAERIIQFYLFKLKCEESDRILRERLGKSPLITQEFNNKTVDTKNVDNITEGVDVKPEIISEESQNKSTRIDDDDDDDDDDDDDDDDDTEEDDDDDNLDMSDYITLDHLQESKQYKCEICTKIFNRQSTLNRHIKTHSAVKEFECSICNKRFSRHDLLLRHKIAHAMKMEKKLEFDSFEVESFSNDDDDTIIIKTENDLYPCSECNLIFIKKDELENHQNEQHSKTTTNDPIKSISCNVCTKTFTKQTHLNRHMKIHDEKKPYSCTICNKGFIRSEQLNNHMNMHSGIKPHVCAICFKGFNQISNLKDHMRTHNGEKPFLCSTCGKGFNQLGNLRQHTIRHSGIKAHLCSTCGNGFASKGELSAHLRKHTGARPFVCPVCNHGFTTSSSLTKHKRIHSGEKPYECDVCKMKFSRSGILARHKRTHTGEKPYVCKFCTKAFSQSNDLTSHLRIHTGEKPYICDACGQAFRQSSALKTHKKTHIERGNDVKNVRLIQAAAFLNNPICNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01366711;
- 90% Identity
- iTF_00929760;
- 80% Identity
- iTF_00929760;