Zimm001506.1
Basic Information
- Insect
- Zonitis immaculata
- Gene Symbol
- -
- Assembly
- GCA_037414775.1
- Location
- JAZBGX010000222.1:15689-17534[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.028 2e+02 1.9 0.1 25 45 173 193 166 200 0.79 2 9 0.018 1.3e+02 2.5 0.1 25 52 295 322 292 324 0.84 3 9 0.0069 51 3.8 0.1 22 54 320 352 316 352 0.87 4 9 0.00062 4.5 7.2 0.0 23 46 349 372 343 378 0.86 5 9 0.0083 60 3.6 0.0 21 48 375 401 371 404 0.87 6 9 0.012 88 3.1 0.1 23 47 433 457 425 464 0.82 7 9 0.051 3.7e+02 1.1 0.1 21 43 459 481 451 486 0.83 8 9 0.00074 5.4 6.9 0.0 21 49 487 515 480 518 0.85 9 9 0.0025 18 5.3 0.1 21 43 515 537 511 542 0.90
Sequence Information
- Coding Sequence
- ATggaagataataatttattaaatatctGTCGAGCTTGTTTAACAGAAACAGGAACATTTCAATCAGTATTTATATCAGATGAAGAAAGGGGTGTTTCAATACATTTATCTGAAATGATGATGGCTTTTGCTTCAGTAcaagtATATTTAGGTGATGGTTTACCAGAGCAAATTTGTAAAGACTGTGCCGAACgtataatacaattttatttatttaaattaaaatgcGAAGACAGTGATCGTTTATTGAGAGAACGTTTAGGTAAATCTccgttaataaataataagaatatagaatcaaaaaatgttgatattttGAATGATAATGTTGATGTGAAACCTGAAATAATTCGAGACGAATCTTCAAATAAAACGAATCAATTCAATGATATTGACGACGACGATGATGATAtagatgatgacgatgatgatgataatgattatattgataatgatgatgttttaAATATGCCCGATTATATAACTTTGGATCAATTGAAACAAGAAActaaacaatataaatgtGGGATATgttcgaaaatatttaatcGTCAATCAACATTAAATCGTCATATAAAAACACATTCAGCAATAAAAGAATTCGAATGTAGTATATGTAATAAACGTTTTAGTCGTCATGATTTATTGTTGCGTCATAAAATAGCACATGCTATGAAAATGGAGAAGAAATTGGAATTTGATAGTTACGAAGTTGAAACATATTCGTCAAACGATGatacgattattataaaaacagaAAACGATCTATATCCGTGTGGtgaatgtaatttaatttttattaaaaaagatGAATTAGATAATCATTTGAATGGACAACATAATAACAAATCATTAAATAGTggcgatttattattaaaatcaattacatGTAATTTATGTACAAAAACATTTACAAAACAATCACATCTAAATCGACATATGAAAATACACGATGAAAAAAAACCgtataattgtaatatatgCAGTAAGGGTTTTATACGTTCcgaacaattaaataatcatatGAATATGCATTCTGGTATTAAACCGCATGTATGTGCTATTTGTTTTAAAGGTTTCAatcaaatatcgaatttaaaaGATCATATGAGAACGCATAATGGTGAAAAACCATTTTTATGTTCAACATGCGGTAAAGGTTTTAATCAATTAGGTAATTTACGACAACATACAATCCGTCATAGTGGTATTAAAGCACATTTATGTAGTACATGTGGTAATGGTTTTGCTAGTAAAGGTGAATTATCAGCTCATTTACGTAAACATACCGGTGCACGTCCGTTTGTTTGTCCTGTATGCAATCACGGTTTTACAACGTCTAGCTCATTAACAAAACATAAACGTATACATTCAGGTGAAAAACCATATGAATGTGATGTTTGTAAAATGAAATTCTCTCGTTCTGGTATATTAGCAAGACATAAACGTACACATACTGGTGAAAAACCATatgtatgtaaattttgtacaaaagCATTTTCACAATCAAACGATTTAACATCACATTTACGTATACATACTGGTGAAAAACCGTATATATGTGATGCTTGCGGACAAGCATTCCGACAAAGTTCAGCATTAAAAACACATAAGAAAACCCACATAGAtcgtaataatagtaatgatatcAAAAATGTACGTCTTATACAAGCGGCagcatttttaaataatccGCTATGTAATATTTAA
- Protein Sequence
- MEDNNLLNICRACLTETGTFQSVFISDEERGVSIHLSEMMMAFASVQVYLGDGLPEQICKDCAERIIQFYLFKLKCEDSDRLLRERLGKSPLINNKNIESKNVDILNDNVDVKPEIIRDESSNKTNQFNDIDDDDDDIDDDDDDDNDYIDNDDVLNMPDYITLDQLKQETKQYKCGICSKIFNRQSTLNRHIKTHSAIKEFECSICNKRFSRHDLLLRHKIAHAMKMEKKLEFDSYEVETYSSNDDTIIIKTENDLYPCGECNLIFIKKDELDNHLNGQHNNKSLNSGDLLLKSITCNLCTKTFTKQSHLNRHMKIHDEKKPYNCNICSKGFIRSEQLNNHMNMHSGIKPHVCAICFKGFNQISNLKDHMRTHNGEKPFLCSTCGKGFNQLGNLRQHTIRHSGIKAHLCSTCGNGFASKGELSAHLRKHTGARPFVCPVCNHGFTTSSSLTKHKRIHSGEKPYECDVCKMKFSRSGILARHKRTHTGEKPYVCKFCTKAFSQSNDLTSHLRIHTGEKPYICDACGQAFRQSSALKTHKKTHIDRNNSNDIKNVRLIQAAAFLNNPLCNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01366711;
- 90% Identity
- iTF_01566418;
- 80% Identity
- iTF_01566418;