Basic Information

Insect: Lydus trimaculatus
Gene Symbol: -
Assembly: GCA_037414755.1
Location: JAZBGY010000147.1:82490-84327[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.2e-08 1.2e-06 28.3 2.1 1 23 177 199 177 199 0.99

2 12 7.1e-06 0.0004 20.4 2.0 1 23 205 227 205 227 0.95

3 12 4.1e-05 0.0023 18.0 0.2 1 23 262 285 262 285 0.96

4 12 7.4e-07 4.2e-05 23.5 3.9 2 23 298 319 297 319 0.97

5 12 8.6e-08 4.8e-06 26.4 0.7 1 23 325 347 325 347 0.98

6 12 1.8e-06 0.0001 22.3 1.4 1 23 353 375 353 375 0.98

7 12 1.1e-05 0.0006 19.8 0.7 1 23 381 403 381 403 0.95

8 12 0.00012 0.0067 16.5 0.7 3 23 411 431 409 431 0.96

9 12 5.7e-07 3.2e-05 23.8 1.9 1 23 437 459 437 459 0.98

10 12 7.8e-05 0.0044 17.1 0.8 1 23 465 487 465 487 0.99

11 12 6.8e-07 3.8e-05 23.6 1.2 1 23 493 515 493 515 0.98

12 12 3.6e-06 0.0002 21.3 0.5 1 23 521 543 521 543 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.2e-08	1.2e-06	28.3	2.1	1	23	177	199	177	199	0.99
2	12	7.1e-06	0.0004	20.4	2.0	1	23	205	227	205	227	0.95
3	12	4.1e-05	0.0023	18.0	0.2	1	23	262	285	262	285	0.96
4	12	7.4e-07	4.2e-05	23.5	3.9	2	23	298	319	297	319	0.97
5	12	8.6e-08	4.8e-06	26.4	0.7	1	23	325	347	325	347	0.98
6	12	1.8e-06	0.0001	22.3	1.4	1	23	353	375	353	375	0.98
7	12	1.1e-05	0.0006	19.8	0.7	1	23	381	403	381	403	0.95
8	12	0.00012	0.0067	16.5	0.7	3	23	411	431	409	431	0.96
9	12	5.7e-07	3.2e-05	23.8	1.9	1	23	437	459	437	459	0.98
10	12	7.8e-05	0.0044	17.1	0.8	1	23	465	487	465	487	0.99
11	12	6.8e-07	3.8e-05	23.6	1.2	1	23	493	515	493	515	0.98
12	12	3.6e-06	0.0002	21.3	0.5	1	23	521	543	521	543	0.98

Sequence Information

Coding Sequence: atggATGATAATGCTTTATTAAACATTTGTCGAGCTTGTTTAACTGAAACAGGTGTATTTGAATCAGCATTTATATCAAATGAGGCAACAACAGGCATTTCAATCCATCTATCTGAAATGATGATGGCCTTTGCTACAGTACAAGTATATTTAGGTGATGGTTTACCGGAACAAATTTGTAAAGATTGTGCTGAACGTATAatacaattctatttatttaaattaaagtgTGAAGAAAGTGATCGGATATTACGCGAACGTCTCGGTAAATCACCACTAATAACACaagaattcaacaataaaacggTAGATAcgaaaaatgttgataatatcaCAGAAGGTGTTGATGTAAAACCGGAAATTATATCGGAAGAAtctcaaaataaatcaactcgaattgatgatgatgacgacgacgatgatgatgatgatgatgatgatgatgatgatacagaagaagatgatgatgatgataatttggaTATGTCTGATTATATAACTTTGGATCATTTACAAGAAtctaaacaatataaatgtgaaatttgtaCGAAAATCTTTAATCGTCAATCAACATTAAATCGTCATATTAAAACACATTCAGCTGTAAAAGAATTCGAATGTagtatttgtaataaacgttTCAGTCGTCATGATTTATTGTTACGACATAAAATCGCACATGCAATGAAAATGGAGAAGAAACTAGAATTTGATAGTTTTGAAGTTGAATCGTTctctaatgatgatgatgatacgattattatcaaaacagaAAACGATCTATATCCGTGTAGTGagtgtaatttgatttttatcaaaaaagacgaattagaaaatcatcaaaacgaacaacattcaaaaacaacaacaaatgatccAATCAAATCGATATCTTGTAATGTTTGTACAAAAAcgtttacaaaacaaacacatcTAAATCGTCATATGAAAATCCATGATGAAAAGAAACCATATTCGTGTACAATCTGTAATAAAGGTTTTATACGTTcagaacaattaaataatcatatGAATATGCATTCTGGTATAAAACCGCATGTATGTGCGATTTGTTTTAAAGGTTTCaatcaaatatcaaatttaaaagatCATATGCGTACACATAACGGTGAAAAACCATTTCTATGTTCAACATGTGGTAAAGGTTTCAATCAATTAGGTAATTTAAGACAACACACAATCCGTCATAGTGGTATTAAAGCACATCTATGTAGTACTTGTGGTAATGGTTTTGCTAGTAAAGGTGAATTATCTGCACATTTACGCAAACATACCGGTGCACGTCCATTTGTTTGTCCTGTATGTAATCATGGTTTTACAACATCAAGttcattaacaaaacataaacGTATCCATTCCGGTGAAAAACCGTATGAATGTGATGTgtgtaaaatgaaattttcacgTTCTGGTATATTGGCACGTCATAAACGTACACATACTGGTGAAAAACCgtatgtttgtaaattttgtacaaaagcATTTTCACAATCGAATGATTTAACATCACATCTACGTATACATACTGGTGAAAAACCGTATATATGTGATGCTTGTGGACAAGCATTTCGACAAAGTTCAGCAttaaaaacacataaaaaaaCCCATATAGAACGTGGTAATGATGTGAAAAATGTACGTTTAATACAAGCAGCAGCATTTCTAAATAATCCAATATGTAATATTTAA
Protein Sequence: MDDNALLNICRACLTETGVFESAFISNEATTGISIHLSEMMMAFATVQVYLGDGLPEQICKDCAERIIQFYLFKLKCEESDRILRERLGKSPLITQEFNNKTVDTKNVDNITEGVDVKPEIISEESQNKSTRIDDDDDDDDDDDDDDDDDTEEDDDDDNLDMSDYITLDHLQESKQYKCEICTKIFNRQSTLNRHIKTHSAVKEFECSICNKRFSRHDLLLRHKIAHAMKMEKKLEFDSFEVESFSNDDDDTIIIKTENDLYPCSECNLIFIKKDELENHQNEQHSKTTTNDPIKSISCNVCTKTFTKQTHLNRHMKIHDEKKPYSCTICNKGFIRSEQLNNHMNMHSGIKPHVCAICFKGFNQISNLKDHMRTHNGEKPFLCSTCGKGFNQLGNLRQHTIRHSGIKAHLCSTCGNGFASKGELSAHLRKHTGARPFVCPVCNHGFTTSSSLTKHKRIHSGEKPYECDVCKMKFSRSGILARHKRTHTGEKPYVCKFCTKAFSQSNDLTSHLRIHTGEKPYICDACGQAFRQSSALKTHKKTHIERGNDVKNVRLIQAAAFLNNPICNI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01366711;
90% Identity: iTF_00929986;
80% Identity: iTF_00929986;