Ipal008966.2
Basic Information
- Insect
- Iselma pallidipennis
- Gene Symbol
- -
- Assembly
- GCA_037464855.1
- Location
- JAZBHA010001081.1:9602-13108[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.062 2.2e+02 1.7 0.1 26 46 180 200 176 206 0.82 2 9 0.057 2e+02 1.9 0.2 23 52 299 328 293 330 0.84 3 9 0.0012 4.3 7.2 0.1 22 54 326 358 322 358 0.89 4 9 0.0014 5 7.0 0.0 23 46 355 378 352 384 0.86 5 9 0.017 60 3.5 0.0 21 48 381 407 377 410 0.87 6 9 0.026 93 2.9 0.1 23 47 439 463 433 470 0.82 7 9 0.11 3.7e+02 1.0 0.1 21 43 465 487 457 492 0.83 8 9 0.0016 5.5 6.9 0.0 21 49 493 521 485 524 0.85 9 9 0.005 18 5.3 0.1 21 43 521 543 517 548 0.90
Sequence Information
- Coding Sequence
- atggaaGATAATAGTTCAACAAATATATGTCGAGCTTGTTTAACAGAAACTGAATCACTCCAATCAATATTCGTACCGGACGAGACAACAGGCATTTCAATACATTTATCCGAAATGATGATGGCTTTTGCTTCAGTccaagTATATTTTGGTGATGGTCTACCGGaacaaatttgtaaacaatGTGCCGAACATACGAcccaattttatttattcaaattacgTTGTGAAGAGAGTGACAGACAATTAAGGGAACGTCTCGGTAAATCACCATTATTGTCTAatgataacaaacaaattgatgcaaaaaatgttgatattcTATCAGAagatattgatataaaaccGGAATTGATCTCGGAAGTGTCTCAAAATAAAACCCATATTGATAGAGAGATAGTAGATGATAtcagtgatgatgatgatgatgatgatgatgatgatgacgatgatgatgatgattgtggtaataatgatgatttaaatatatctGAATATATAACACTAGATCAATTAAAAGATGATGTTAAGCAATATAAGTGTGATATATGTTCGAAAATATTCAGTCGCCAATCAACATTAAATCGTCATATTAAAATCCATTCCGCTATAAAAGAATTCGAATGCAGTATGTGTAATAAACGATTTAGTCGTCATGATTTATTGTTGCGTCATAAAATTGCACATGCCATGAAAATGGAGAAGAAATTCGAATTTGATAGTTTTGAAAGTTTGGCAAGTATTACAACAACTGAagatacaattattattaaaaccgAAAACGATCTATATCCATGTAATGaatgtaatttgatttttattaagaaaGATCAATTAGAACATCATTTGAATGAACAACATTCAAGACAGACaactacaaaaattgatttattaaaaccgATTGCGTGTACGGTGTGTTCAAAAACGTTTACCAAACAATCACATTTGAATCGTCATAAGAAGATCCATGATGAAAAGAAACCACATATCTGTACGATATGTAATAAAGGTTTTATACGTTCCgaacaattaaacaatcatttaAATCTACATTCTGGGATCAAACCGCATGTATGTGCGATTTGTTTTAAAGGTTTCAATCAAATCTCGAATCTGAAAGATCATATGAGAACACATAATGGTGAAAAACCGTTTCTATGTTCGACATGTGGTAAAGGTTTCAATCAATTAGGTAATCTACGGCAACATACAATCCGTCATAGTGGTATTAAAGCACATCTATGCAGTATCTGTGGTAATGGATTTGCTAGTAAAGGAGAATTATCAGCACATCTACGCAAACATACCGgTGCACGTCCGTTCGTTTGTCCGGTTTGTAATCACGGTTTTACAACATCTAGTTCATTAACAAAACATAAACGTATCCATTccggtgaaaaaccatatgaATGTGATGtatgtaaaatgaaattttcacgtTCTGGTATATTGGCACGACATAAACGtacacatactggtgagaaACCGTATGTATGTAAATTCTGTTCAAAAGCTTTTTCACAATCAAATGATCTAACATCACATTTACGTATACATACCGGTGAAAAACCGTATATTTGTGATGCTTGTGGGCAAGCATTTCGACAAAGTTCAGcattaaaaacacataaaaaaacacataGAGATCGTAATAGTAgtggtagtaataatagtagtaatagtagtgaTGTGAAAAATGTACGTTTAGTTCagacaacaacatttttaaGTGATTCATTAAGTAAAAACTATTAG
- Protein Sequence
- MEDNSSTNICRACLTETESLQSIFVPDETTGISIHLSEMMMAFASVQVYFGDGLPEQICKQCAEHTTQFYLFKLRCEESDRQLRERLGKSPLLSNDNKQIDAKNVDILSEDIDIKPELISEVSQNKTHIDREIVDDISDDDDDDDDDDDDDDDDCGNNDDLNISEYITLDQLKDDVKQYKCDICSKIFSRQSTLNRHIKIHSAIKEFECSMCNKRFSRHDLLLRHKIAHAMKMEKKFEFDSFESLASITTTEDTIIIKTENDLYPCNECNLIFIKKDQLEHHLNEQHSRQTTTKIDLLKPIACTVCSKTFTKQSHLNRHKKIHDEKKPHICTICNKGFIRSEQLNNHLNLHSGIKPHVCAICFKGFNQISNLKDHMRTHNGEKPFLCSTCGKGFNQLGNLRQHTIRHSGIKAHLCSICGNGFASKGELSAHLRKHTGARPFVCPVCNHGFTTSSSLTKHKRIHSGEKPYECDVCKMKFSRSGILARHKRTHTGEKPYVCKFCSKAFSQSNDLTSHLRIHTGEKPYICDACGQAFRQSSALKTHKKTHRDRNSSGSNNSSNSSDVKNVRLVQTTTFLSDSLSKNY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01366711;
- 90% Identity
- -
- 80% Identity
- -