Stae018869.1
Basic Information
- Insect
- Sphaerophoria taeniata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_943591125.1
- Location
- CALSBT010000126.1:3233285-3244966[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.1e-113 8.8e-109 364.6 33.1 1 299 195 485 195 486 0.93
Sequence Information
- Coding Sequence
- ATGTCTGCCGACAAAATGTCAACAGTTATAAAACAATCACCGAATGAATTGATCTATGATCAATTTACAGACGAGCAGAATAATAATAAAATTAGTAATTTAAAAAAATCATCATCAGCCGAAGATTATGATGAGATCGGCGAAGAATTCGATTTTAGTGATAGTGAATTGATTGATGACAATAATGTCACAACTGTCAGTGTCAAATCAGGTGAAAATAATAATATGATTGTGAATGACGTTGGTAACGTCACAGTGAATAGTGGTAGCATTGCCAGCAGTGAAATGGCAGATGATACGACCGATTTTTACGGTAGTGATGTTGTGTTGAAACCCACAAATCTAAATCTTGATCAATCGAAAACGGTGCAAATGGATGCGTTCTGTCCGATAACGCCGAGCAAAATTTTCGATTGTGAGGAGAATAATTCATTTTCCCACAACGATACCATTGCAAATGGACATCACAAACGAAAGCAGGAAGGTGACGTCAACAACGAGAATGAGGATGATTTGGCTGACGAAGAAGAGGAAGAAGATGACGAATTGATTGTACAATTTTTAGGACAAGCTAATCAAATTGCTGAAGCAAGACTGGCAGCCAGACGTCAGGCACGTGCTGAAGCACGCGAAATTCGCATGCGCGAATTGGAACGCCAGCAAAAAGAACTCGAACAAAATGCTGATCGAGTGTTCGATATGCAAACGGCTGCCGGTATTGATCCGCTGGCAAGGTCACGCCTCAATGCATCCAGTGTCACCGGAGTTGTTAATTCGGTGCGAGCCAGTTCAATGTCCTCCCGCAGAAGTAGTGAAGATTCCCTCGAAGAGGAAGGACGCAGTTTACGTGATATTAGGCATGAGCTCAAGGATGTCGAGGAACGTTTTCGAAAAGCAATGATAGCCAATGCACAATTAGACAATGAACGAGCCTCGCAATCTTATCAAATTCAATTGCTCAAGGATAAACTGGAAGAAATGGAAGAATCCTATTCGCAGTTGCAGCGTGAATTCAAAGATAAAACACGCGAAAGTAATGCATTCAAGCGTAACCTCGACAAATTGACCGAAGAACTGAAGCTCGTCCATGGCCAGCTAACCGAACGTGATGCTCTTATTGCCGAACAGGGTTTGGTTATTGTAGCTGTTGAAAACGAGGATGGCTCGGATGCCAAACGTGCGCTAGTCACTTTAGAAAATGCACAATTGTTAGGATCTGTTCAAGGTTCCTTAGACGTTCGACTTAAAAAATTTAGCGAAGAGAAAGTTCAACTTCAGGCCGAAGTGCAAAATTTACAGGACCAATTAGAAAATATCAAGACACAGGGACGAGGAAGGGGCCAGTCAATAAATGGCACCCTCGGTTCCGATGAAGATTATGAAGCTCAAAGAGAAGCCAACAAGATCATCTCTGACTACAAGTATAAATTGCAAAAAGCCGAACAAGAAATTGCTAGTCTACAAGCCAGCTTAGCTAGATCAGAAACACAAGTTATACGATACAAGAGTACAGCGGAAGCTGCTGAAAAAGCCGAAGCAGAGTTGAAAATCGAAAGGAGGAAACTTCAACGCGAGGAATTGGTCATCCATTTCTGGGATGAGTGCCATTGCCAATGA
- Protein Sequence
- MSADKMSTVIKQSPNELIYDQFTDEQNNNKISNLKKSSSAEDYDEIGEEFDFSDSELIDDNNVTTVSVKSGENNNMIVNDVGNVTVNSGSIASSEMADDTTDFYGSDVVLKPTNLNLDQSKTVQMDAFCPITPSKIFDCEENNSFSHNDTIANGHHKRKQEGDVNNENEDDLADEEEEEDDELIVQFLGQANQIAEARLAARRQARAEAREIRMRELERQQKELEQNADRVFDMQTAAGIDPLARSRLNASSVTGVVNSVRASSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQSYQIQLLKDKLEEMEESYSQLQREFKDKTRESNAFKRNLDKLTEELKLVHGQLTERDALIAEQGLVIVAVENEDGSDAKRALVTLENAQLLGSVQGSLDVRLKKFSEEKVQLQAEVQNLQDQLENIKTQGRGRGQSINGTLGSDEDYEAQREANKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQREELVIHFWDECHCQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00665633; iTF_00664834; iTF_00694635; iTF_00693838; iTF_01318246; iTF_00984235;
- 90% Identity
- -
- 80% Identity
- -