Ecor012036.1
Basic Information
- Insect
- Eupeodes corollae
- Gene Symbol
- lrrfip2_1
- Assembly
- GCA_945859775.1
- Location
- CAMAOS010000147.1:241854-255435[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-113 1.8e-109 366.5 32.7 1 299 205 495 205 496 0.93 2 2 0.22 3.6e+03 -2.2 4.4 221 244 525 548 500 570 0.46
Sequence Information
- Coding Sequence
- ATGTACATACCTACACCACATTCGAGTCTTTGTCGTAAGTCTCAGCCTGAGCCAGTTGTCAACGTCTGGATCGTTATGACAGTGTCTGACAATATGTCAGAAGTGATAAAGCATACGAATGGTGGTTTGATCTATGATCAAAACACAAATGAGGAGAATAATAATAATAATAGTTTGAAAAAAGCCGAAGATTATGACGAAATTGGTGAAGAATTCGATTTCAGTGATAGTGAATTAATTGATGACAACATCAGTACTGTCAAATCTAATAATAACATAAATGACGTGAATGACGTTTTAAACGTCACAGTGAATAACGGTGTATCAATTGTTGATATCGGTCTGTCAAAACCCTCGAATCTTAATCTAGATCAATCGAAAGAAGTACAAATGGATGCGATATGTCCCATGACACCAAGTAAAATCTTCGATTGTGAAGAGAGTAATGAATCTTCCATCGACACCACCGGCACTAGGAAGAATGTTCCAAACGGCCATAACAGTGCCGGAACGGAAGACGTCAACGGCGACGACTACGACGACGATGATGTAGCCGAAGGCGAAGAAGATGACGAATTGATTGTACAATTTTTAGGACAAGCTAATCAAATTGCTGAAGCAAGACTGGCAGCCAGACGGCAAGCACGTGCCGAAGCACGAGAAATTCGCATGCGCGAATTGGAGCGCCAGCAAAAAGAACTGGAGCAAAATGCTGATCGAGTATTTGATATGCAAACAGCAGCCGGCATTGATCCTCTGGCTAGATCGCGTCTCAACGCATCCAGTGTCACCGGAGTGGTTAATTCGGTACGTGCCAGTTCTATGTCCTCCCGCAGAAGTAGTGAAGATTCCTTGGAAGAGGAAGGACGTAGCTTACGTGATATTAGGCATGAACTCAAGGATGTCGAGGAACGTTTTCGAAAAGCAATGATAGCCAATGCACAACTAGACAATGAACGAGCCTCACAATCTTATCAAATTCAATTGCTTAAAGATAAACTGGAAGAAATGGAAGAATCCTTTTCCCAGTTGCAGCGTGAATTTAAAGAGAAAACACGTGAATGTAACGCTTTTAAGCGTAACCTTGACAAATTGACAGAAGAACTGAAACTTGTTAATGGCCAGTTAACCGAACGGGATGCGCTAATTGCCGAGCAGGGTTTGGTTATTGTAGCTGTCGAAAATGAGGATGGCTCTGATGCCAAACGTGCTCTAGTCACTTTAGAAAATGCACAATTATTAGGATCTGTTCAAGGTTCTCTTGATGTTCGACTTAAAAAATTTAGCGAAGAAAAAATTCAACTTCAGGCTGAAGTGCAAAACTTACAGGACCAATTAGAAAATGTCAAGACCCAGGGACGAGGTCGAGGTAATTCAATGAATGGCACCCTTGGCTCTGATGAGGATTATGAAGCTCAAAGAGAAGCCAATAAAATTATCTCTGACTACAAATATAAATTGCAAAAAGCCGAACAAGAAATTGCTAGTCTACAAGCCAGCTTAGCTAGATCAGAAACACAAGTTATACGATATAAAAGTACAGCGGAAGCTGCTGAAAAAGCCGAAGCAGAATTAAAAATCGAGAGGAGAAAACTCCAACGAGAGAACCGAGAAGCAATGGAACGACTAGAAGAACTAGAAACATCTAATAATCACCTTCTAAAGCGACTGGATAAATTAAAGAACGCCAAGAGTGCTCTTCTCAAAGAACTCTGA
- Protein Sequence
- MYIPTPHSSLCRKSQPEPVVNVWIVMTVSDNMSEVIKHTNGGLIYDQNTNEENNNNNSLKKAEDYDEIGEEFDFSDSELIDDNISTVKSNNNINDVNDVLNVTVNNGVSIVDIGLSKPSNLNLDQSKEVQMDAICPMTPSKIFDCEESNESSIDTTGTRKNVPNGHNSAGTEDVNGDDYDDDDVAEGEEDDELIVQFLGQANQIAEARLAARRQARAEAREIRMRELERQQKELEQNADRVFDMQTAAGIDPLARSRLNASSVTGVVNSVRASSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQSYQIQLLKDKLEEMEESFSQLQREFKEKTRECNAFKRNLDKLTEELKLVNGQLTERDALIAEQGLVIVAVENEDGSDAKRALVTLENAQLLGSVQGSLDVRLKKFSEEKIQLQAEVQNLQDQLENVKTQGRGRGNSMNGTLGSDEDYEAQREANKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01356878;
- 90% Identity
- iTF_00664072;
- 80% Identity
- -