Spal004643.1
Basic Information
- Insect
- Scaptomyza pallida
- Gene Symbol
- sip1
- Assembly
- GCA_018152965.1
- Location
- JAECXP010000051.1:1675684-1678390[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-94 2.8e-90 302.7 11.9 2 275 421 691 420 691 0.97 2 2 0.14 1.3e+03 -1.2 0.0 243 269 704 730 696 738 0.76
Sequence Information
- Coding Sequence
- ATGTCGGACAACGAATATGAGCGTTTTGAAATCACGGACTATGATTTGGACAACGAGTTTAATATAAATCGGCCACGCCGTCGTCATACAAAGCACCAGCAAATCTATGGCATTTGGGCTGACGACAGCGATAATGATAGTGAAGGCGAAACCAGCGGTCGACGCGGAAGGCGTGGACTTGGTGGTGGCTCCAGTAATAAACCCAAAGATTATACTGCACCCGTAAATTTTGTTGCCGGCGGCATTCAACAAGCTGGCAAAAAGTCAAAAAAACAATTGGAGGATGGCAAAGATGAGGCTAGAAGTGAGGATTCAGATGACAGTGATGAAGCGCGTCCATCGTTTGGTGGAAAGCAGCCGCAACTAATGGACAATAACGAGGATAACAGCACAGACAGCTCCGAGGCGGAAGAAAGAAAAGAACAGCAGCAGCAAATGCGTTCCAGAAGCATTGCTGGAATGCGTCACAATTCGCATATTGCCAGCGGTCGCAACGTGGGCGCCTGGGAGCAGCATACGCGTGGCATTGGTGCCAAACTGCTGCTTCAGATGGGCTACGAACCGGGCAAAGGATTGGGCAAGGATCTGCAGGGTATACAGCAGCCGGTGCAGGCACATGTACGCAAGGGCAGAGGTGCTATTGGTGCCTATGGACCCGAAACGGCAGCCAGCATTGGTGGTCAAGCGAAACCTCTAAAAGAAGATGAAGATGTGAAGGAGGCCAGGGAGTTCAAGGAGCAGCTGAACAAGTGGAAGAAAGGTGGCGCAGAGCCACGCGAGAAGAGCAACAAACAGCAGCGTTACTACTACAAATCCGTGGAGGAAGTCATAGCAAAGAGTCTCAAGTCGGACCATTTGCTCTCCGAGAAGCTGGCCAAGCAATTGGGCAATGTGCCGGTCATCGACATGACCGGACCGGAACGTCGCGTGCTAAGTGGGTATCATGCCCTTGCGCAGACCAAGATCACGCCCGAGGAGTCGCTGTACGATGAGCAGGGAGCTGAAGCTAAGGATACGCCCGTAAGCATCTTCAGTATGCCGGAACTGGCGCATAATATGGCGCTGCTGGTTAACCAATGCGAGCAGGAGATCATTAGCATTGACAAAACCAAGCGGGAGGGTGAGGATCTTCAAGCGGCGCTGGAGCAGGAGCAGCGACAGTTGCTGGAACTGGTGCATCTGGAGCGGAATCACATGAATACCTTGAATGAGGTGCTCTCCCGCTTGGATCGGCTCAGTGAGAATCCGGATTTAACAATGGACCAGGCAGAGGATCTGTTCGTGGATCTGCAGCGAAACTATCCGGCTGAGTTTGAGGAGTATGGCATGGCGGATATGGCCGGAGGCGTCATTGCTCCGCTGCTGCGCCGGGAGCTGGGTGACTGGCAGCCCCTGGAGCAGCCTACAGAGCCCTTGGAGATGATGAGGCGTTGGCGCAAGATATTGCAAAGGGATGAAGATCAACTGCATCAGCAGCAACCACGCAATGTATTCGATCCCTACTCCTCTCTAGTCTGGGCCGGAGTGATGCCCTCCATTCGAACCAGCGCACTTGCCTGGCCGCCCAAGGAGCATGCCACAATGGCTGCCTTTCTGGATGCCTGGGCGCCCGTGTTGCCCACCTGGGTGCTGGATTCCATACTGGAGAAGCTGGTGTTGACCCGTTTGAGGGCAGGTGTGCAAGAATGGGATCCACTGACGGATACGGTGCCCATTCACAGTTGGATCTTGCCCTGGCATGGCTTGTTGGGTGAGAAGCTGGAGGAGAGTGTCTATCCGCAGATCCGTAGCAAGCTGGGTGCAGCACTGGAGGCCTGGTCGCCACAGGATCGTTCCGCACGCGCCATGCTCACTCCTTGGCAGACGGCATTCCCAGAGGAGCAGCTTGTTCAGTTCCTATTGCGTCACATCATTCCCAAGCTGCAGGCGGTGCTCGGAGAGTTCATCATTAATCCGCTGCAGCAGGATCTGGAGCTGTGGCATCAGGTATGGGAGTGGCACGAACTAATCCCTGCTGCCCACATGGCCCAGCTGCTGGACAAGTGCTTCTTCCCACGCTGGATGCAGGTGCTCGTCATGTGGTTGAATCAGTCGCCCGATTATGCTGAGATCTCACGCTGGTATGCCGGCTGGAAGAGCATGTTTCCCGATTCCATCCTGCGGGAGCCTTGCATCAAGGAGCATCTGCGTCGTGCTCTGGATATGTTGCATCGCGCCACAGATGCAGTGCTTCAACCCTCTGCTGTGCCACCCCCGCCAATGCCCCCCGTTCCAGCACCTGTACTCCTCGCACCCGTCATGATGGTCGATGTGGGCTCAACCGCCCAGCTGGAGTTCAAGGAACTCGTCTCCCAGAAGTGCGCCGAACTGGGCATCATCTTTGCCCCACTGCCAGGACGTCGGGAACTGGGAAAGCAGATCTATCGTGTGGGAAAACTTTTCTGCTATATCGATCGAAATGTTTGCATGCTGACCAATGCCAGTTTCCAGAATTGGCAGCCAGTGTCACTTAATCAACTGCTAGAACAAGCTCAAACTGGCATCGTCTAA
- Protein Sequence
- MSDNEYERFEITDYDLDNEFNINRPRRRHTKHQQIYGIWADDSDNDSEGETSGRRGRRGLGGGSSNKPKDYTAPVNFVAGGIQQAGKKSKKQLEDGKDEARSEDSDDSDEARPSFGGKQPQLMDNNEDNSTDSSEAEERKEQQQQMRSRSIAGMRHNSHIASGRNVGAWEQHTRGIGAKLLLQMGYEPGKGLGKDLQGIQQPVQAHVRKGRGAIGAYGPETAASIGGQAKPLKEDEDVKEAREFKEQLNKWKKGGAEPREKSNKQQRYYYKSVEEVIAKSLKSDHLLSEKLAKQLGNVPVIDMTGPERRVLSGYHALAQTKITPEESLYDEQGAEAKDTPVSIFSMPELAHNMALLVNQCEQEIISIDKTKREGEDLQAALEQEQRQLLELVHLERNHMNTLNEVLSRLDRLSENPDLTMDQAEDLFVDLQRNYPAEFEEYGMADMAGGVIAPLLRRELGDWQPLEQPTEPLEMMRRWRKILQRDEDQLHQQQPRNVFDPYSSLVWAGVMPSIRTSALAWPPKEHATMAAFLDAWAPVLPTWVLDSILEKLVLTRLRAGVQEWDPLTDTVPIHSWILPWHGLLGEKLEESVYPQIRSKLGAALEAWSPQDRSARAMLTPWQTAFPEEQLVQFLLRHIIPKLQAVLGEFIINPLQQDLELWHQVWEWHELIPAAHMAQLLDKCFFPRWMQVLVMWLNQSPDYAEISRWYAGWKSMFPDSILREPCIKEHLRRALDMLHRATDAVLQPSAVPPPPMPPVPAPVLLAPVMMVDVGSTAQLEFKELVSQKCAELGIIFAPLPGRRELGKQIYRVGKLFCYIDRNVCMLTNASFQNWQPVSLNQLLEQAQTGIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01325652;
- 90% Identity
- iTF_01323366; iTF_01322633; iTF_01324100; iTF_01321910; iTF_01320458; iTF_01326383; iTF_01321181; iTF_01327879; iTF_01327158;
- 80% Identity
- -