Shsu019285.1
Basic Information
- Insect
- Scaptomyza hsui
- Gene Symbol
- sip1_1
- Assembly
- GCA_018152825.1
- Location
- JAECXO010000269.1:12754374-12757500[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.53 5.2e+03 -3.1 0.2 44 86 234 275 232 287 0.63 2 3 1.4e-92 1.4e-88 297.3 15.1 3 275 424 693 422 693 0.97 3 3 0.24 2.4e+03 -2.0 0.0 246 269 709 732 699 748 0.57
Sequence Information
- Coding Sequence
- ATGTCGGACAACGAGTATGAGCGTTTTGAAATAACGGACTATGATTTGGACAACGAGTTTAATATAAATCGACCACGCCGACGCCAAACCAAGCACCAACAAATCTACGGCATTTGGGCTGACGACAGTGATAATGATAGCGAGGGCGAAACCAGCGGTCGACGCGGAAGGCGTGGCCTAGGCGGCGGACCCAGTGGCAAGCCCAAGGACTATACAGCGCCCGTAAATTTTGTTGCCGGAGGCATTCAACAAGCCGGCAAAAAGCCAACAAAGAAACAGCTGGAAGGGGTTAAAGATGAGGAGGATGGGAGTGGGGAGTCGGACGACAGTGACGAGGCGCGTCCATCGTTTGGTGGCAAGCAGGCACAGCTAGAGGACAACAGCACGGATAGCTCCGGGGCGGAGGAGCGAAAGGAGCAACTGCAGCAGCAGCAGCAGCAGCAACAGATGCGTTCCAGGAGCATTGCGGGAATGCGTCACCATTCGCACATTGCCAGCGGCAAGAATGTGGGCGCCTGGGAGCAGCATACGCGTGGCATTGGAGCCAAGCTGCTGCTCCAGATGGGCTACGAGCCGGGCAAGGGATTGGGCAAGGATCTGCAGGGCATACAGCAGCCGGTGCAGGCACATGTGCGCAAAGGAAGAGGTGCCATCGGTGCCTATGGACCCGAGACGGCAGCCAGCATTGGTGGCCAGGCGAAGCCGCTGAAGGAGGACGAGGACGTGAAGGAGGCAAGGGAGTTCAAGGAGCAGCTGACCAAGTGGAAGAAGGGTGGAGCGGAGCAGCGGGAGAAGAAACAGCAGCGCTACTACTACAAGTCCGTGGAGGAGGTCATTGCCAAGAGCCAGAAGTCGGATCAGCTGCTCTCCGAGAAGCTGGCCAAGCAGCTGGGCAATGTGCCCGTCATAGACATGACCGGACCGGAACGTCGCGTCCTCAGTGGCTATCATGCTTTGGCCCAGACCAAGATCACGCCCGAGGAGGCGCTGTACGATGAGCATGGAGGCGATGGCAAGGATTCGCCCATTAGCATCTTCAGCATGCCGGAACTGGCGCACAACATGGCGCTCCTGGTCAACCAGTGTGAGCAGGAGATCATTGGCATTGACAAGGCCAAGCGGGAGGGTGAGGATCTGCAGGCGGCGCTGGAGCAGGAGCAGCGCCAGTTGCTGGAACTGGTGCATCTGGAGCGGAATCACATGGAAACGTTGAGCGAGGTGCTCTCCCGCCTGGATCGGCTGAGCGAGAGTCCGGATCTGACCATGGCACAGGCGGAGGAGCTGTTCCTGGACCTGCAGCAGAGCTATCCGGCTGAGTTCGAGGAGTACGGCATGGCGGATATGGCCGGAGGCGTCATTGCTCCGCTGCTGCGGCGGGAACTGGGCGACTGGCAGCCTCTGGAGCAGCCCACTCTGCACCTGGAGATGATGAGGCGTTGGCGCCAGATCCTGCAAAAGGATGAGGAGCAACTGCAGCAGCAGCAATCTCGCAATGTCTTCGATCCCTACTCCTCCCTGGTCTGGGCCGGAGTGATGCCCTCCATCCGGACCAGCGCGCTCGCCTGGCAGCCCAAGGAGCATGCCATAATGGCGGCCTTTCTGGATGCCTGGGCGCCAGTGCTGCCCACGTGGGTGCTGGATTCCATACTGGAGAAACTGGTGCTGACCAGACTGAGGGCTGGTGTCCAGGAATGGGATCCTCTCACCGATACGGTGCCCATCCACAGCTGGATCCTGCCCTGGCACGGCTTGTTGGGTGCAAAGCTGGAGGAGAGCGTCTATCCGCAGATCCGCAGCAAGCTGGGCGTGGCATTGGAGGCGTGGTCACCACAGGATCGATCCGCGCGTGCCATGCTCACGCCCTGGCAGGCGGCGTTCCCGGAGGACCAGCTCATCCAGTTCCTGCTGCGTCACATCATCCCCAAGCTGCAGGCGGTGCTCGCGGAGTTCATCATCAATCCGCTGCAGCAGGATCTGGAGCTGTGGCATCAGGTCTGGGAGTGGCACGAGCTAATCCCTGCTCCCCACATGGCCCAGCTCCTGGACAAGTGCTTCTTCCCACGCTGGATGCAGGTGCTCGTCATCTGGCTGAATCAGTCGCCGGACTTTGCCGAGATCTCGCGCTGGTATTCCGGCTGGAAGAGCATGTTCTCCGAGTCCATCTTGCGGGAGCCCTGCATCAAGGAGCATCTCCGCCGTGCTCTCGACATGCTCCACCGTGCCACGGATGCAGTGCTTCAACCCACCGTCATACCACCCCCTCCCATGCCCCCTGTACCCACACCTGTACTCCTTGCCCCCGTCATGATCGTCGATGTGGGTTCGCCTGCCCAACTGGAGTTCAAGGAACTCGTCTCCCAAAAATGCGCCGAGCTGGGCATCGTCTTTGCTCCATTGCCAGGACGTCGCGAACTGGGAAAACAAATCTATCGTGTGGGAAAACTCTTTTGCTATATCGATCGGAACGTTTGCATGCTGACCAATGCCAGTTTTCAGAATTGGCAGCCAGTGTCACTTAATCAACTGCTGGAACAAGCACCAACTGGCATCATCTAA
- Protein Sequence
- MSDNEYERFEITDYDLDNEFNINRPRRRQTKHQQIYGIWADDSDNDSEGETSGRRGRRGLGGGPSGKPKDYTAPVNFVAGGIQQAGKKPTKKQLEGVKDEEDGSGESDDSDEARPSFGGKQAQLEDNSTDSSGAEERKEQLQQQQQQQQMRSRSIAGMRHHSHIASGKNVGAWEQHTRGIGAKLLLQMGYEPGKGLGKDLQGIQQPVQAHVRKGRGAIGAYGPETAASIGGQAKPLKEDEDVKEAREFKEQLTKWKKGGAEQREKKQQRYYYKSVEEVIAKSQKSDQLLSEKLAKQLGNVPVIDMTGPERRVLSGYHALAQTKITPEEALYDEHGGDGKDSPISIFSMPELAHNMALLVNQCEQEIIGIDKAKREGEDLQAALEQEQRQLLELVHLERNHMETLSEVLSRLDRLSESPDLTMAQAEELFLDLQQSYPAEFEEYGMADMAGGVIAPLLRRELGDWQPLEQPTLHLEMMRRWRQILQKDEEQLQQQQSRNVFDPYSSLVWAGVMPSIRTSALAWQPKEHAIMAAFLDAWAPVLPTWVLDSILEKLVLTRLRAGVQEWDPLTDTVPIHSWILPWHGLLGAKLEESVYPQIRSKLGVALEAWSPQDRSARAMLTPWQAAFPEDQLIQFLLRHIIPKLQAVLAEFIINPLQQDLELWHQVWEWHELIPAPHMAQLLDKCFFPRWMQVLVIWLNQSPDFAEISRWYSGWKSMFSESILREPCIKEHLRRALDMLHRATDAVLQPTVIPPPPMPPVPTPVLLAPVMIVDVGSPAQLEFKELVSQKCAELGIVFAPLPGRRELGKQIYRVGKLFCYIDRNVCMLTNASFQNWQPVSLNQLLEQAPTGII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00513447;
- 90% Identity
- iTF_01324884;
- 80% Identity
- -