Scal005692.1
Basic Information
- Insect
- Scaptomyza caliginosa
- Gene Symbol
- sip1
- Assembly
- GCA_035044725.1
- Location
- JAWNNR010000312.1:318151-320961[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6e-93 2.2e-89 299.6 14.3 4 275 423 690 420 690 0.98 2 2 0.23 1.9e+03 -2.0 0.0 245 269 705 729 696 744 0.70
Sequence Information
- Coding Sequence
- ATGTCGGACAACGAATATGAGCGTTTTGAAATAACGGACTATGATTTGGACAACGAGTTTAATATAAATCGACCACGCCGACGTCAATCAAAGCACCAGCAAATCTACGGCATTTGGGCTGATGACAGCGATAATGATAGCGAAGGCGATACCAATGGTCGACGTGGAAGACGTGGTCTGGGTGGTGGATCTAGCAATAAGCCCAAGGACTACACTGCTCCCGTAAATTTTGTTGCCGGCGGCATTCAACAAGCcggcaaaaagccaacaaaaaaacagctggAGGAGGGTAAAGATGAGGCAATGAGTGATGATTCGAATGATAGTGACGAAGCGCGTCCATCATTCGGTGGAAAGCAGCCGCAGCTAATGGACAACAACGAGGATAACAGCACGGACAGCTCCGAGGCGGAAGAGAgaaaagaacagcagcaaatgcgtTCCAGGAGCATTGCTGGAATGCGCCACAAATCGCACATTGCAAGCGGTCGCAATGTAGGCGCATGGGAGCAGCATACGCGTGGGATTGGTGCCAAGCTGCTGCTACAGATGGGCTATGAGCCGGGTAAGGGCTTGGGGAAGGATTTGCAGGGTATACAGCAGCCGGTGCAGGCGCATGTGCGCAAAGGTCGCGGTGCCATTGGTGCCTATGGACCCGAGACGGCAGCCAGCATTGGCGGTCAAACAAAGGCTCAGAAAGAGGATGAGGATGTGAAAGAGGCTAGAGAGTTCAAGGAGCAGCTGACCAAGTGGAAGAAAGGTGGCGTGGAGGCACGCGAGaagagcaacaagcagcagcgttACTACTACAAATCTGTGGAGGAAGTCATTGCCAAGAGCCACAAGTCGGATCAGTTGCTGTCCGAGAAGCTGGCCAAGCAGCTGGGCAATGTGCCAGTTATAGACATGACTGGACCGGAACGTCGCGTCCTAAGTGGCTATCATGCTTTGGCTCAGACCAAGATAACGCCCGAGGAGTCGCTGTATGATGAGCAGGGTGGCGAAGGCAAAGATTCGCCTGTTAGCATCTTTAGTATGCCGGAACTGGCGCATAATATGGCGCTGCTGGTTAACCAATGTGAACAGGAGATCATTGGCATTGACAAAGCCAAGCGGGAGGGTGAGGATATGCAAGCGGCACTGGAGCAGGAACAGCGACAGCTGCTGGAACTAGTGCATCTCGAGCGCAATCACATGAATACATTAAATGAGGTGCTCTCGCGCCTGGATCAACTTAGCGAAAATCCGGATTTGACTATGGCGCAGGCGGAGGCTTTGTTTCTGGATCTGCAGAGAAATTATCCCGCTGAGTTTGAGGAGTATGGCATGGCGGATATGGCTGGAGGCGTCATTGCTCCGCTGCTGCGACGAGAACTGACGGACTGGGAGCCACTGGAGCAGCCTACCCAGCATTTGGACATGATGAGGCGTTGGCGCAAGATATTGCAAAAGGACGATGTACAATTGCAGGAGCAATCTCGAAATGTATTCGATCCCTACTCCTCTCTAGTCTGGGCGGGAGTAATGCCCTCCATTCGGACTAGTGCGCTGGCTTGGCCGCCCAAGGAGCATGCCATAATGGCTGCCTTCCTGGATGCTTGGGCACCTGTGTTGCCCACCTGGGTGCTGGATTCCATACTGGAGAAGCTAGTGTTGACCCGGTTGAGGGTTGGTGTACAGGAATGGGATCCCTTAACGGATACGGTGCCCATTCACAGTTGGATTTTGCCCTGGCATGGCTTGTTGGGTGCGAAGCTGGAGGAGAGTGTCTATCCGCAAATCCGTAGCAAACTGGGCGTGGCACTGGAAGCTTGGTCACCACAGGATCGTTCCGCACGCGCCATGCTAACTCCCTGGCAGAAGGCATTCCCagaggagcagctgctgcagttcctGTTGCGTCACATCATTCCCAAGTTGCAGGCAGTGCTTGGAGAGTTTATCATCAATCCGCTGCAGCAGGATCTGGAGCTGTGGCATCAGGTGTGGGAATGGCACGAACTAATCCCTGCGCCACACATGGCTCAGCTGCTGGACAAGTACTTCTTCCCGCGCTGGATGCAGGTGCTCGTCATGTGGTTGAATCAGTCGCCAGACTTTGCAGAAATCTCTCGTTGGTACGCCGGCTGGAAGAGCATGTTCTCCGAGTCCATCTTGCGCGATCCCTGCATCAAAGAGCATCTCCGTCGTGCCCTGGACATGCTTCATCGTGCCACAGATGCTGTACTTCAACCCACTGTTGTTCCACCTCCGCCCATGCCCCCAGTGCCAGCACCTGTCCTCCTTGCACCCGTCATGATGGTCGACATGGGTGCAACCGCTCAGTTGGAGTTTAAGGAACTCGTCTCGCAGAAGTGCGCCGAACTGGGCATCATCTTTGCACCATTGCCAGGTCGTCGGGAGCTGGGAAAACAGATCTATCGTGTGGGAAAACTCTTTTGCTATATCGATCGGAATGTTTGTATGCTGACCAATGCCAGTTTTCAGAATTGGCAGCCGGTGTCACTTAATCAACTGCTGGAACAAGCCCAAACTGGCGTTAtctaa
- Protein Sequence
- MSDNEYERFEITDYDLDNEFNINRPRRRQSKHQQIYGIWADDSDNDSEGDTNGRRGRRGLGGGSSNKPKDYTAPVNFVAGGIQQAGKKPTKKQLEEGKDEAMSDDSNDSDEARPSFGGKQPQLMDNNEDNSTDSSEAEERKEQQQMRSRSIAGMRHKSHIASGRNVGAWEQHTRGIGAKLLLQMGYEPGKGLGKDLQGIQQPVQAHVRKGRGAIGAYGPETAASIGGQTKAQKEDEDVKEAREFKEQLTKWKKGGVEAREKSNKQQRYYYKSVEEVIAKSHKSDQLLSEKLAKQLGNVPVIDMTGPERRVLSGYHALAQTKITPEESLYDEQGGEGKDSPVSIFSMPELAHNMALLVNQCEQEIIGIDKAKREGEDMQAALEQEQRQLLELVHLERNHMNTLNEVLSRLDQLSENPDLTMAQAEALFLDLQRNYPAEFEEYGMADMAGGVIAPLLRRELTDWEPLEQPTQHLDMMRRWRKILQKDDVQLQEQSRNVFDPYSSLVWAGVMPSIRTSALAWPPKEHAIMAAFLDAWAPVLPTWVLDSILEKLVLTRLRVGVQEWDPLTDTVPIHSWILPWHGLLGAKLEESVYPQIRSKLGVALEAWSPQDRSARAMLTPWQKAFPEEQLLQFLLRHIIPKLQAVLGEFIINPLQQDLELWHQVWEWHELIPAPHMAQLLDKYFFPRWMQVLVMWLNQSPDFAEISRWYAGWKSMFSESILRDPCIKEHLRRALDMLHRATDAVLQPTVVPPPPMPPVPAPVLLAPVMMVDMGATAQLEFKELVSQKCAELGIIFAPLPGRRELGKQIYRVGKLFCYIDRNVCMLTNASFQNWQPVSLNQLLEQAQTGVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01325652;
- 90% Identity
- iTF_01324884;
- 80% Identity
- -