Scyr016000.1
Basic Information
- Insect
- Scaptomyza cyrtandrae
- Gene Symbol
- sip1
- Assembly
- GCA_035044605.1
- Location
- JAWNNS010000650.1:8863668-8866525[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-94 2.3e-90 303.0 13.5 3 275 420 689 418 689 0.96 2 2 0.13 1.2e+03 -1.1 0.0 244 269 703 728 694 744 0.64
Sequence Information
- Coding Sequence
- ATGTCAGACAACGAATATGAGCGTTTTGAAATTACGGACTATGATTTGGACAACGAGTTTAATATAAATCGACCACGCCGACGCCACACGAAGCATCAGCAAATCTACGGCGTTTGGGCTGATGACAGCGATAATGATAGCGAAGGCGAAATCAGCGGTCGACGCGGAAGGCGTGGTTTGGGCGGCGGCTCTAGTGGTAAGCCCAAGGACTACACTGCGCCCGTAAATTTTGTTGCCGGAGGAATTCAACAAGCTGgaaaaaagccaaagaaaaagcAGTTGGAGGATGGTAAAGATGAGGCTAGAAGTGATGATTCGACCGACAGCGACGAAGCGCGTCCATCGTTTGGTGGAAAACAGCCGCAGCTAATGGACAATGAGGATAAAAGCACGGATAGCTCCGAAGCGGAAGATAAaaaggaacagcagcagctgcattcCAGGAGCATTGCTGGAATGCGTCACAGCTCGCATATTGCCAGCGGTCGAAATGTTGGCGCCTGGGAGCAGCATACGCGTGGAATTGGTGCCAAGCTGCTGCTCCAGATGGGCTACGAACCGGGCAAGGGATTGGGCAAGGATCTGCAGGGCATACAACAGCCAGTGCAGGCACATGTGCGAAAAGGCAGAGGAGCTATTGGTGCCTATGGCCCGGAGACGGCAGCCAGCATTGGTGGTCAGGCGAAGCCTCTGAAAGAGGATGAGGATGTGAAGGAGGCCAGAGAGTTTAAGGAACAGCTGAACAAGTGGAAGAAAGGTGGCGCGGAGCCACGCGAGAAGAGCAAGCAGCAGCGTTACTATTACAAATCCGTAGAGGATGTCATCGCGAGGAGCCATAAGTCGGATCATTTGCTATCCGAGAAGCTGGCCAAGCAGCTAGGCAATGTGCCGGTTATAGACATGACCGGACCGGAACGTCGCGTCCTAAGTGGCTATCATGCCCTCGCTCAGACCAAGATTACGCCCGAGGAGTCGCTGTACGATGAGCACGTAGGCGAAGGTGTGGATGCGCCTGTAAGCATATTTAGTATGCCGGAACTGGCGCATAACATGGCGCTGCTGGTTAACCAATGTGAGCAGGAGATCATTAGCATTGACAAAGCCAAACGGGAGAGTGAGGATCATGAAGCAGCGCTGGAGCAGGAGCAGCGACACTTGCTGGAACTGGTGCATCTGGAGCGCAATCACATGAATACATTGAATGAGGTGCTCTCCCGGCTGGATAAGCTTAGCGAGAATCCTGATCTAACTATGGCACAGGCGGAGGAACTGTTTTTGGATCTGCAGCGAAATTATCCCGCTGAGTTTGAGGAGTATGGCATGGCGGATATGGCCGGAGGGGTCATTGCTCCGCTGCTGCGACGGGAACTGGATGAGTGGCGACCCCTTGAAGAGCCCACCAAGTACTTAGAGATGATGAAGCGTTGGCGCAAGATATTGCAAAAGAATGAAGACCGACTGCATCAGCAGCAATCTCGCAATGTTTTCGATCCCTATTCCTCTCTAGTCTGGGCTGGAGTGATGCCCTCCATTCGCACCAGCTCGCTTGCATGGCCGCCCAAGGAGCATGCCCCAATGGCTGCCTTTCTGGATGCCTGGGCGCCAGTGTTGCCCACTTGGGTGCTGGATTCCATACTGGAGAAACTAGTTTTGACCAGGCTGACGGCTGGTGTGCAGGAATGGGATCCACTGACGGATACGGTGCCCATTCACAGTTGGATTTTGCCCTGGCATGGATTGTTGGGTGCGAAGCTGGAGGAGACAGTCTATCCGCAGATCCGTAGCAAACTGGGCGCTGCACTTGAGGCTTGGTCACCACAAGATCGTTCCGCACGCGCCATGCTCACCCCCTGGCAGGCGGCCTTTCCGGAGGAGCAGCTTGTCCAGTTCCTATTGCGTCACATCATACCCAAGTTGCAAGCGGTGCTCGGGGAGTTCAACATTAATCCACTGCAACAGGATTTGGAGCTGTGGCATCAGGTGTGGGAGTGGCACGAACTTATCCCTGCTCCCCACATGGCCCAGCTGTTGGACAAGTACTTCTTTCCACGCTGGATGCAGGTTCTCGTTTTGTGGTTGAATCAGTCGCCAGATTATGCCGAGATCTCACGCTGGTATGCCGGCTGGAAGAGTATGTTCTCCGACTCCATCTTGAGGGAGCCTTGCATCAAAGAGCATCTGCGTCGTGCTCTGGACATGCTTCATCGTGCCACTGATGCAGTTCTTCAACCCAATGTTGTACCACCACCTCCAATGCCCCCGATGCCAGCACCTGTGCACCTTGCCCCCGTCATGATCGTCGATGCAGGTTCATCCGCCCAACTAGAGTTCAAGGAACTTGTCTCCCAGAAGTGCGCCGAACTGGGCATCATCTTTGCTCCACTGCCAGGACGTCGGGAACTTGGAAAACAGATCTATCGCGTGGGAAAACTCTTTTGCTATATCGATCGGAATGTTTGCATGCTGACCAATGCCAGTTTTCAGAATTGGCAGCCTGTTTCACTCAATCAACTGCTGGAACAAGCACAAACTGGCATTATctaa
- Protein Sequence
- MSDNEYERFEITDYDLDNEFNINRPRRRHTKHQQIYGVWADDSDNDSEGEISGRRGRRGLGGGSSGKPKDYTAPVNFVAGGIQQAGKKPKKKQLEDGKDEARSDDSTDSDEARPSFGGKQPQLMDNEDKSTDSSEAEDKKEQQQLHSRSIAGMRHSSHIASGRNVGAWEQHTRGIGAKLLLQMGYEPGKGLGKDLQGIQQPVQAHVRKGRGAIGAYGPETAASIGGQAKPLKEDEDVKEAREFKEQLNKWKKGGAEPREKSKQQRYYYKSVEDVIARSHKSDHLLSEKLAKQLGNVPVIDMTGPERRVLSGYHALAQTKITPEESLYDEHVGEGVDAPVSIFSMPELAHNMALLVNQCEQEIISIDKAKRESEDHEAALEQEQRHLLELVHLERNHMNTLNEVLSRLDKLSENPDLTMAQAEELFLDLQRNYPAEFEEYGMADMAGGVIAPLLRRELDEWRPLEEPTKYLEMMKRWRKILQKNEDRLHQQQSRNVFDPYSSLVWAGVMPSIRTSSLAWPPKEHAPMAAFLDAWAPVLPTWVLDSILEKLVLTRLTAGVQEWDPLTDTVPIHSWILPWHGLLGAKLEETVYPQIRSKLGAALEAWSPQDRSARAMLTPWQAAFPEEQLVQFLLRHIIPKLQAVLGEFNINPLQQDLELWHQVWEWHELIPAPHMAQLLDKYFFPRWMQVLVLWLNQSPDYAEISRWYAGWKSMFSDSILREPCIKEHLRRALDMLHRATDAVLQPNVVPPPPMPPMPAPVHLAPVMIVDAGSSAQLEFKELVSQKCAELGIIFAPLPGRRELGKQIYRVGKLFCYIDRNVCMLTNASFQNWQPVSLNQLLEQAQTGII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00513447;
- 90% Identity
- iTF_01324884;
- 80% Identity
- -