Sfla012054.1
Basic Information
- Insect
- Scaptomyza flava
- Gene Symbol
- sip1
- Assembly
- GCA_003952975.1
- Location
- RKRM01000375.1:59898-62821[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.5e-92 5.3e-88 295.1 14.9 3 275 421 694 419 694 0.97 2 2 0.17 1.4e+03 -1.5 0.0 245 269 709 733 699 749 0.57
Sequence Information
- Coding Sequence
- ATGTCGGACAACGAATATGAGCGTTTTGAAATAACGGACTATGATTTGGACAACGAGTTTAATATAAACCGACCACGGCGACGCCAAACCAAGCACCAGCAAATCTACGGCATTTGGGCTGATGACAGCGATAATGATAGCGAAGGCGAAACCAGTGGTCGACGCGGCAGGCGTGGCCTAGGTGGCGGCTCTAGCAGTAAGCCCAAGGATTATACTGCGCCCGTCAATTTTGTTGCCGGAGGCATTCAACAAGCCGGCAAAAAGTCAAAGGTAAAACAGCTAGATGATGGTAAAGATGTGGCTAGAAGTGATGATTCCGACGACAGTGACGAAGCACGTCCATCGTTTGGCGATAAGCAACCACAGCTTATGGACAACAACGAGGATAACAGCACAGATAGCTCCGAGGCGGAAGAGAGAAAGGAACATCAGCAGATGCGTTCCAAAAGCTTTGCTGGAATGCGTCACAATTCGCACATACCGAGCGGTCGTAATGTGGGCGCCTGGGAGCAGCATACGCGTGGAATCGGTGCCAAGCTGCTGCTCCAGATGGGCTATGAGCCTGGCAAGGGATTGGGCAAGGATTTGCAAGGTATACAGCAGCCGGTGCAAGCACATGTACGAAAAGGTCGAGGTGCCATTGGTGCCTACGGACCCGAGACGGCAGCCAGCATTGGCGGTCAGGCGAAGCCCCAGAAAGAAGATGAAGATGTCAAAGAAGCCAGGGAGTTCAAGGAGCAGTTGACCAAGTGGAAGAAAGGCGGTGTGGAGCCAcgcgaaaaaaacaaacagcagcgTTACTACTACAAATCCGTGGAGGAAGTCATTGCCAAAAGCCATAAGTCGGATCACCTGCTCTCCGAAAAGCTAGCCAAGCAGCTGGGCAATGTGCCGGTTATAGACATGACCGGGCCAGAACGTCGCGTTCTAAGTGGCTATCATGCTCTCGCTCAGACCAAGATCACGCCCGAGGAGTCGCTTTATGATGAGCAGGGAGGCGAAGGCAAGGATTCGTCCATTAGCATCTTTAGCATGCCTGAACTGGCGCATAATATGGCACTTCTGGTTAGCCAATGTGAGCAGGAGATCATTTTAATTGACAAGGCCAAACGGGAGAGTGAGGATCAGCAAGCGGCGCTTGAGCAGGAGCAGCGACAGTTGCTGGAGTTGGTGCATCTGGAGCGGAATCACATGAATACATTGAACGAGGTGCTCTCCCGCCTCGATCAGTTGAGCGAGAATCCAGATTTAACTATGACACAGGCGGAGGATCTATTCGTGGAGCTGCAGCGGAACTATCCCGCCGAGTTTGAAGAATATGGCATGGCAGATATGGCCGGAGGCGTCATTGCTCCACTTCTGCGCCGGGAACTGGCTGACTGGCAGCCACTGGAACAGCCTACTCTACATTTGGAGATGATGAAACGTTGGCGCACAATATTGCAAAAGGATGAGGAGCAActgcatcatcagcagcagcagcagcaatctcGCAATGTTTTCGATCCCTACTCCTCACTGGTCTGGGCCGGCGTGATGCCCTCCATTCGGACTAGTGCGCTCGCCTGGCCGCCCAAGAAACATGCCATAATGGCTGCCTTTCTGGATGCCTGGGCGCCAGTTTTGCCAACCTGGGTGCTGGATTCCATACTGGAGAAACTGGTGCTGACTAGGTTGAGGGTTGGTGTGCAGGAGTGGGATCCTCTCACAGATACGGTGCCCATTCACAGTTGGATTTTGCCCTGGCATGGCTTGCTGGGTGGGAAGCTGGAGGAGACTGTCTATCCGCAGATTCGCAGCAAACTGGGCGCGGCACTGGAGGCTTGGTTACCACAAGATCGCTCGGCTCGCGCCATGCTCACTCCCTGGCAGACAGCGTTCCCGGAGGAGCAGCTGATCCAGTTCCTGCTACGTCACATCATTCCCAAATTGCAGGCGGTGCTCGGAGAATTCATCATCAATCCGCTGCAGCAGGATTTGGAGCTGTGGCATCAGGTGTGGGAGTGGCACGAGCTAATCCCCCCTGCCTACATGGCCCAGCTGCTGGACAAGTACTTCTTTCCACGCTGGATGCAGGTGCTTGTGATGTGGCTAAATCAGTCACCAGATTATGCAGAGATCTCACGCTGGTATGCCGGCTGGAAGAGCATGTTCTCCGAATCGATTTTGCGGGAACCTTGCATCAAGGAACATTTGCGTCGTGCTCTGGACATGCTGCATCGTGCCACGGATGCAGTTCTTCAACCCACTGTTGTGCCACCTCCACCCATGCCACCGGTGCCAGCACCCGTGCTCCTTGCTCCCGTCATGCTCGTCGATGTTGGCTCGTCTGCTCAACTGGAGTTCAAGGAACTCGTCTCCCAAAAATGCGCCGAATTGGGCATCATCTTTGCTCCACTGCCAGGACGTCGGGAACTGGGAAAACAGatttatcgTGTGGGCAAACTCTTTTGTTACATCGATCGGAACGTTTGCATGATGACCAATGCCAGTTTTCAGAATTGGCAGCCGGTTTCACTTAATCAACTACTGGAACAAGCACAAACTGGcattatttga
- Protein Sequence
- MSDNEYERFEITDYDLDNEFNINRPRRRQTKHQQIYGIWADDSDNDSEGETSGRRGRRGLGGGSSSKPKDYTAPVNFVAGGIQQAGKKSKVKQLDDGKDVARSDDSDDSDEARPSFGDKQPQLMDNNEDNSTDSSEAEERKEHQQMRSKSFAGMRHNSHIPSGRNVGAWEQHTRGIGAKLLLQMGYEPGKGLGKDLQGIQQPVQAHVRKGRGAIGAYGPETAASIGGQAKPQKEDEDVKEAREFKEQLTKWKKGGVEPREKNKQQRYYYKSVEEVIAKSHKSDHLLSEKLAKQLGNVPVIDMTGPERRVLSGYHALAQTKITPEESLYDEQGGEGKDSSISIFSMPELAHNMALLVSQCEQEIILIDKAKRESEDQQAALEQEQRQLLELVHLERNHMNTLNEVLSRLDQLSENPDLTMTQAEDLFVELQRNYPAEFEEYGMADMAGGVIAPLLRRELADWQPLEQPTLHLEMMKRWRTILQKDEEQLHHQQQQQQSRNVFDPYSSLVWAGVMPSIRTSALAWPPKKHAIMAAFLDAWAPVLPTWVLDSILEKLVLTRLRVGVQEWDPLTDTVPIHSWILPWHGLLGGKLEETVYPQIRSKLGAALEAWLPQDRSARAMLTPWQTAFPEEQLIQFLLRHIIPKLQAVLGEFIINPLQQDLELWHQVWEWHELIPPAYMAQLLDKYFFPRWMQVLVMWLNQSPDYAEISRWYAGWKSMFSESILREPCIKEHLRRALDMLHRATDAVLQPTVVPPPPMPPVPAPVLLAPVMLVDVGSSAQLEFKELVSQKCAELGIIFAPLPGRRELGKQIYRVGKLFCYIDRNVCMMTNASFQNWQPVSLNQLLEQAQTGII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00513447;
- 90% Identity
- iTF_01324884;
- 80% Identity
- -