Stum010224.1
Basic Information
- Insect
- Scaptomyza tumidula
- Gene Symbol
- sip1
- Assembly
- GCA_035044465.1
- Location
- JAWNNW010000596.1:866697-869536[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-94 8.9e-91 304.3 13.4 3 275 421 690 419 690 0.96 2 2 0.16 1.4e+03 -1.5 0.0 245 269 705 729 695 745 0.57
Sequence Information
- Coding Sequence
- ATGTCGGACAACGAATATGAGCGTTTTGAAATTACGGACTATGATTTGGACAACGAGTTTAATATTAATCGACCACGCCGACGTCACACGAAGCACCAGCAAATCTACGGCATTTGGGCTGATGACAGCGATAATGAAAGCGTGGGCGAAACCAGCGGTCGCCGCGGAAGGCGTGGCTTGGGCGGCGGCTCTAGTAATAAGCCCAAGGATTACACTGCGCCTGTAAATTTTGTTGCCGGGGGAATCCAACAAGCTGgcaaaaagccaaagaaaaatcAGTTAGAAGATGGAAAAGATGAGGCTAAAAGTGATGATTCGACTGACAGCGACGAGGCGCGTCCATCGTTTGGTGGAAAGCAGCCGCAGCTAATGGACAACAACGAGGATAAAAGCACAGACAGTTCCGATGCGGAAGATAAaaaggaacagcagcagctgcattcCAGGAGCATTGCTGGAATGCGTCACAACTCGCATATTGCCAGCGGTCGAAATGTGGGCGCCTGGGAGCAGCACACGCGTGGAATCGGTGCCAAGCTGCTGCTCCAGATGGGCTACGAACCGGGCAAGGGATTGGGCAAGGATCTGCAGGGCATACAGCAGCCGGTGCAGGCACATGTGCGAAAAGGCCGAGGTGCTATTGGTGCCTATGGCCCCGAGACGGCAGCCAGCATTGGTGGTCAGGCGAAGCCCCTGAAAGAGGATGAGGATGTGAAGGAGGCCAGAGAGTTTAAGGAACAGCTGAACAAGTGGAAGAAAGGTGGCGCGGAGCCACGCGAGAAGAGCAAGCAGCAGCGTTACTATTACAAATCCGTGGAGGATGTCATCGCGCGGAGCCATAAGTCGGATCATTTGCTATCCGAGAAGCTGGCCAAGCAGCTAGGCAATGTGCCGGTTATAGACATGACCGGTCCGGAACGTCGCGTCCTAAGTGGCTATCATGCCCTCGCTCAGACCAAGATCACGCCCGAGGAGTCGCTGTACGATGAGCACGTAGGCGAAAGTGTGGATACGCCTGTAAGCATCTTTAGTATGCCGGAACTGGCGCATAATATGGCGCTGCTGGTAAACCAATGTGAGCAGGAGATCATTAGCATTGACAAAGCCAAACGGGAGAGTGAGGATCATGAAGCGGCgctggagcaggagcagcgACACTTGCTGGAACTGGTGCATCTGGAGCGCAATCACATGAATACATTGAATGAGGTGCTCTCCCGTCTGGATCAGCTTAGCGAGAATCCAGATCTATCTATGGCACAGGCGGAGGAGCTGTTCCTGGATCTGCAGCGAAATTATCCCGCTGAGTTTGAGGAGTATGGTATGGCGGATATGGCCGGAGGCGTCATTGCTCCGCTACTGCGACGGGATCTGGATGAGTGGCAACCCCTTGAAGAGCCCACCAAGCACTTAGAGATGATGAAGCGTTGGCGCAAGATATTGCAAAAGGATGAAGATCGACTGCATCAGCAGAAATCTCGCAATGTTTTCGATCCCTATTCCTCTCTAGTCTGGGCTGGAGTGATGCCCTCCATTCGCACTAGCTCGGCTGCATGGCCGCCCAAAGAGCATGCCCCAATGGCTGCCTTTCTGGATGCCTGGGCGCCAGTGTTGCCCACCTGGGTGCTGGATTCCATACTGGAGAAACTAGTGTTGACCAGGTTGAGGGCTGGTGTGCAGGAATGGGATCCACTGACGGATACGGTGCCCATTCACAGCTGGATTTTGCCCTGGCATGGCTTACTGGGTGCCAAGCTGGAGGAGACAGTTTATCCGCAGATCCGTAGCAAACTAGGCGCAGCATTAGAGGCTTGGTCACCACAGGATCGTTCCGCACGTGCCATGCTCACCCCCTGGCAGGCTGCCTTCCCGGAGGAGCAGCTTGTCCAGTTTCTGTTACGTCACATCATCCCCAAGTTGCAGGCGGTGCTCGGGGAGTTCATTATCAATCCACTGCAACAGGATCTGGAGCTGTGGCATCAGGTGTGGGAGTGGCATGAACTTATCCCGCCTGCCCACATGGCCCAGCTGTTGGACAAGTACTTCTTTCCACGCTGGATGCAGGTTCTCGTTTTGTGGTTGAATCAGTCGCCCGATTATGCCGAGATCTCACGCTGGTATGCCGGCTGGAAGAGCATGTTCTCCGAGTCCATCTTGAGGGAGCCTTGCATCAAAGAGCATCTGCGTCGTGCTCTGGACATGCTTCATCGTGCCACGGATGCAGTTCTTCAACCCAATGTTGTGCCACCTCCTCCAATGCCCCCGATGCCAGCACCTGTACACCTTGCCCCCGTAATGATCGTCGATGCGGGTTCATCCGCCCAACTAGAGTTCAAGGAACTCGTCTCGCATAAGTGCGCCGAACTGGGCATCATCTTTGCTCCCCTGCCAGGACGTCGGGAACTGGGAAAACAGATCTATCGCGTGGGAAAACTCTTTTGCTATATCGATCGAAATGTTTGCATGCTGACCAATGCCAGTTTTCAGAATTGGCAGCCTGTGTCACTTAATCAACTGCTGGAACAAGCACAAACTGGcattatctaa
- Protein Sequence
- MSDNEYERFEITDYDLDNEFNINRPRRRHTKHQQIYGIWADDSDNESVGETSGRRGRRGLGGGSSNKPKDYTAPVNFVAGGIQQAGKKPKKNQLEDGKDEAKSDDSTDSDEARPSFGGKQPQLMDNNEDKSTDSSDAEDKKEQQQLHSRSIAGMRHNSHIASGRNVGAWEQHTRGIGAKLLLQMGYEPGKGLGKDLQGIQQPVQAHVRKGRGAIGAYGPETAASIGGQAKPLKEDEDVKEAREFKEQLNKWKKGGAEPREKSKQQRYYYKSVEDVIARSHKSDHLLSEKLAKQLGNVPVIDMTGPERRVLSGYHALAQTKITPEESLYDEHVGESVDTPVSIFSMPELAHNMALLVNQCEQEIISIDKAKRESEDHEAALEQEQRHLLELVHLERNHMNTLNEVLSRLDQLSENPDLSMAQAEELFLDLQRNYPAEFEEYGMADMAGGVIAPLLRRDLDEWQPLEEPTKHLEMMKRWRKILQKDEDRLHQQKSRNVFDPYSSLVWAGVMPSIRTSSAAWPPKEHAPMAAFLDAWAPVLPTWVLDSILEKLVLTRLRAGVQEWDPLTDTVPIHSWILPWHGLLGAKLEETVYPQIRSKLGAALEAWSPQDRSARAMLTPWQAAFPEEQLVQFLLRHIIPKLQAVLGEFIINPLQQDLELWHQVWEWHELIPPAHMAQLLDKYFFPRWMQVLVLWLNQSPDYAEISRWYAGWKSMFSESILREPCIKEHLRRALDMLHRATDAVLQPNVVPPPPMPPMPAPVHLAPVMIVDAGSSAQLEFKELVSHKCAELGIIFAPLPGRRELGKQIYRVGKLFCYIDRNVCMLTNASFQNWQPVSLNQLLEQAQTGII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00513447;
- 90% Identity
- iTF_01324884;
- 80% Identity
- -