Slat010168.1
Basic Information
- Gene Symbol
- sip1
- Assembly
- GCA_037075145.1
- Location
- JBAMCM010000217.1:19572897-19575584[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3e-95 3.1e-91 306.0 12.4 2 275 428 695 427 695 0.98 2 2 0.034 3.5e+02 0.8 0.0 156 193 706 740 699 750 0.68
Sequence Information
- Coding Sequence
- ATGTCGGACAATGAGTATGAACGCTTTGAGATAACCGACTATGATTTGgacaatgaatttaatataaacaGACCAAGGCGTCGCCAAACGAAACATCAGCAAATTTATGGTATTTGGGCCGATGATAGCGAAAATGAGAGTGGTGAAGATGCCCGTGGACGCCGCGGTCTTGGTTCTGGAtccagcaaatcaaaaaaagattatACAGCCCCCGTTAGTTTTGTTGCCGGAGGTATTCAACAAGCCGGcaagaaaaaagataaaaagatCAAACAAAAGTCTGAAGATAAGCTGTCTTCAGGCAGTGAACATGACCAAGAGAGCGATGAAGCAGAAGAAGCTAGACCGGCTTTTGGGCGGAAGCAGCCTCAGCTCATGGATTTAGAGAACAGTCCGCATTCATCCGACAGCTCGGCTGATGAAGCAGCTCAACGAGTAGCCGCAGCAAATGTCTCCAGACCAACATCTAGTTTTAAGCACAAATCCCACATATCCAGCAATCGAAATGTGGGTGCCTGGGAGCAGCACACACGTGGCATAGGCGCTAAGCTACTGCTACAAATGGGCTACGAGCCAGGCAGGGGCTTAGGCAAAGACCTCCAGGGCATATCCCAGCCAGTGGAGGCTCATGTGCGTAAAGGACGCGGAGCCATTGGAGCATATGGCCCAGAGACAGCGGCCAGTGTGGGTGGCAAAGGTAAGCCCATCAAAATGGATGAGGATGTACGCGAAGCCAAGGAGTTTAAAGAGCAGATgaataaatggaaaaagaacGGCAGTGAAGTCCGCGAAAAGGGTGCCAAACGCTACTACTACAAGTCTGTCGAGGAAGTCATAGCCAAGGGCAAAAAATCAGATCACTTGCTTTCAGAAAAGCTAAGCAAGAAGCTTGGTAATGTTCCGGTCATTGATATGACTGGACCAGAACGACGCGTCCTAAGTGGTTACCACGCCCTGGCCCAGTCAAAAGTCACGGTTGATGAGACGCTTTACGAGGTGGACGTAAATGCCAAGGCCGAGCAGTCCGGCTCCGCACCAGGCTCCGTGTTTGCCATGCCCGAGCTGAAACATAATCTCCAGCTTCTGGTAAGCCAATGCGAGCAGGAGATAATTGCTATTGACAAGGCTGAGCGCGAGTCATCGGACCGCCAGGCTGCCTTAGAGCatgaatacaaaaaactaCAGGAAATTGTACACCTAGAGAAGAATCACATGACCACGTTGGAAAGAGCCTTGGCCCTTGTCGAAGAGCTAAGTAGTGGCGATACCAATCTGAGCCTAGCCAGGGCTGAGCAGCTCTTCCTGGAATTGCAGCATGACTATGCAGCCGAATACAAGGAATTTGGTCTTGCCGACTTGGCAGCCGGAGTCATTGCTCCTTTAGTCAAGATTGAACTCACCACCTGGCAACCTCTAGAAGAGCCTACCAAATTCCTGGACCTTGTGAAAAGGTGGCGAGGCATACTCCAGCAGGAGTCCGGCACAGAACAGCCGCGCAATGTCTTCGACCCCTACTCTTCCCTCATCTGGGCAGGAGTTATACCCTCGTTTCGAGCCTGCGCTGAAATATGGCCACCCAAGCAGCATCAGCCCATGGCTGCCCTGCTTGATGCATGGGCTCCACTCTTGCCTACTTGGGTATTGGATTCGGTGCTGGAACAATTGGTCCTGCCACGACTGGCAGCCGGCGTGCGAGACTGGGATCCTCTGACAGACACAGTGCCCATACATAGTTGGATACTGCCCTGGCATGCCATTTTGGGCGGGAAACTCGAGGAATCCATCTACCCCCAGATACGTAATAAGCTGGGCGTGGCCCTTCAAGCCTGGTCACCCCAAGACCGTTCTGCCCGTGCCATGCTCACTCCCTGGAAAACAGCCTTTCCCGAAGAGGAGATGCTGCATTTCCTCCTGCGTCACATCATACCCAAATTGCAGGCGGTCCTCAGTGATTTCGTGATCAACCCACTGCAACAGAATATGGAACTCTGGCATCAGGTCTGGGAATGGAATGAGCTCGTACCACCTATGCACATGGCTCAGCTTTTGGACAAATACTTCTTCCCGCGTTGGATGCAGGTGTTGGTCATGTGGCTAAACCAATCTCCAGATTATACAGAAATCTCGCGCTGGTTTAGCGGCTGGAAGAGTATGCTGAGTGAGGAGGTGCTGCGTGAGCCTCCGGTCAAAGAACACTTGAGGCGAGCCTTGGAAATGCTCCATCGTGCCTCAGATGCCCTACTCAATCCAGCGGCTGGTCCACCCCTAATCACAAGTATGCCTCAAGCAGGCCCAGCCCCTCCTGTGATGCTCACTCCGGTGATGCTGGTGGATGTTCAACCGGCTCAGCTGGAATTCAAGGAATTGGTCTCACAAAAGTGCTCAGAACTGGGTATAATCTTTGCCCCACTGCCGGGACGTCGCCAGCTAGGCAAGCAAATCTATCGAGTGGGCAAACTATATTGTTATATTGACCGAAACGTTTGTATGCTAAGCGATGGCAGTTTCACGAACTGGCAACCTGTGAGTCTGCCGCAGCTGCTGGAGCGCTCTCAAACTGGATTAATTTAG
- Protein Sequence
- MSDNEYERFEITDYDLDNEFNINRPRRRQTKHQQIYGIWADDSENESGEDARGRRGLGSGSSKSKKDYTAPVSFVAGGIQQAGKKKDKKIKQKSEDKLSSGSEHDQESDEAEEARPAFGRKQPQLMDLENSPHSSDSSADEAAQRVAAANVSRPTSSFKHKSHISSNRNVGAWEQHTRGIGAKLLLQMGYEPGRGLGKDLQGISQPVEAHVRKGRGAIGAYGPETAASVGGKGKPIKMDEDVREAKEFKEQMNKWKKNGSEVREKGAKRYYYKSVEEVIAKGKKSDHLLSEKLSKKLGNVPVIDMTGPERRVLSGYHALAQSKVTVDETLYEVDVNAKAEQSGSAPGSVFAMPELKHNLQLLVSQCEQEIIAIDKAERESSDRQAALEHEYKKLQEIVHLEKNHMTTLERALALVEELSSGDTNLSLARAEQLFLELQHDYAAEYKEFGLADLAAGVIAPLVKIELTTWQPLEEPTKFLDLVKRWRGILQQESGTEQPRNVFDPYSSLIWAGVIPSFRACAEIWPPKQHQPMAALLDAWAPLLPTWVLDSVLEQLVLPRLAAGVRDWDPLTDTVPIHSWILPWHAILGGKLEESIYPQIRNKLGVALQAWSPQDRSARAMLTPWKTAFPEEEMLHFLLRHIIPKLQAVLSDFVINPLQQNMELWHQVWEWNELVPPMHMAQLLDKYFFPRWMQVLVMWLNQSPDYTEISRWFSGWKSMLSEEVLREPPVKEHLRRALEMLHRASDALLNPAAGPPLITSMPQAGPAPPVMLTPVMLVDVQPAQLEFKELVSQKCSELGIIFAPLPGRRQLGKQIYRVGKLYCYIDRNVCMLSDGSFTNWQPVSLPQLLERSQTGLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00904741; iTF_01319750; iTF_00338328; iTF_00337514; iTF_00335889; iTF_00339139; iTF_00336722;
- 90% Identity
- -
- 80% Identity
- -