Cpro011862.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chymomyza procnemis
Gene Symbol
sip1
Assembly
GCA_035046065.1
Location
JAWNOJ010000024.1:9248196-9250902[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.8e-95 2.5e-91 306.1 14.4 3 275 420 686 418 686 0.98
2 2 0.064 5.7e+02 -0.1 0.0 156 190 697 730 690 742 0.60

Sequence Information

Coding Sequence
atgtCGGACAATGAGTATGAGCGCTTTGAAATCACAGACTACGATTTGGataatgaatttaatataaaccGACCGCGGCGACGGCAAACAAAACATCAACAAATTTATGGCATTTGGGCGGACGACAGCGACAATGACAGCGGCGAGGATAACAGCAGCGGACGTCGTGGACGCCGTGGTCTAGGCGCAGGCAGCAGCAAAGCCAAAGATTATACGGCGCCGGTAAATTTTGTTGCCGGCGGCATACAACAAGCAGgcaagaaaaaaacgaaaaataatgaacaaaCTGCGGATAAGGCAGCCGGCTCTGGCAGTGAGAGTGCTGATAGTGATAATGCACGTCCTGCATTTGGACGCAAACAGTCACAACTTATGAATGACGATGCGCCGTCGTCGGATAGCTCAGCTGAAGAGGCACAGCGTGCAGCGGCAAATGTGGCTAGACCTACGTCCAGCTTTAAGCATAAATCGCATATATCTAGTGAGCGCAATGTGGGTGCTTGGGAACAGCATACCAGAGGTATTGGTGCCAAACTTCTGCTACAAATGGGCTACGAGCCTGGCAAGGGTTTGGGCAAAGATCTGCAAGGTATATCACAGCCGGTGCAGGCGCATGTGCGCAAAGGACGCGGTGCCATAGGCGCCTATGGACCAGAAAAAACGGCCACTGTGGGCGGCAAGGCCAAGCCCATTAAAATGGACGAGGATTTGCGCGATGCCAAGGAGTCTAAGGAGCAAATGAACAAGTGGAAAAAAGGTGAAACACGTGACAAGGGCGCCAAGCGTTACTACTACAAGTCAGTGGAGGAAATCATAGCCAAAGGTCAAAAGTCGAATCATTTATTATCggaaaaactaagcaaaaagcTGGGCAATGTGCCTGTCATAGACATGACGGGCCCCGAAAAACGCGTGCTAAGCGGTTATCATGCGCTCGCGCAAACCAAAGTAACCGTCGATGAGACGCTTTATGATGTGGATGCTAGTGGCAAAACGGATCAGCCCAGCGCCGGCTGTGTATTTAGCATGCCTGAGCTAACGCATAATCTACAGCTGCTGGTGAGCCAGTGTGAGCAGGAAATCATTGCCATTGATAAGACCGAACGGGAGAGCACAGATCGTCAAGCTGCACTGCAGCATGAGCTTACAAAGCTGCAAGAAATTGTGCATCTTGAGCGCAATCACATGAACACCTTGGAGTGCGTTTTTGCGCGTGTCGAGGAGCTGAGCAGCAATGAGGGCAAACTAACGCTGACACGCGCGCAACAGCTATTCCTGGAGCTGCAACAGGATTTTGCTGCTGAATATAAAGAGTTTGGTTTGGCAGATTTGGCTGCCGGTGTTATTGCACCACTGGTTAAGCTGGAGCTTACCGAATGGCGTCCACTCGAGCAGCCAACGCTACATCTGGAGCTTATCAAGAAATGGCGTGGCATTTTGCAGCAAGAGGATAGCACAGAGCAGCCACGCAATGTCTTTGATCCCTATTCCTCGCTGGTTTGGGCTGGTGTCATACCCTCGTTTCGTGCATGCGCTGACACTTGGCAACCGAAGCTGTATCAACCCATGGCTGCGCTGTTGGATGCTTGGGCGCCATTGCTGCCCACCTGGGTGCTGGATTCAGTACTAGAGCAGCTGGTGCTGCCGCGCTTGACAGCAGGCGTGCGTGATTGGGATCCGCTGACCGATACTGTGCCCATACATAGCTGGATATTACCCTGGCATACCATACTAGGCACAAAGCTGGAGGAGACCGTATATCCGCAAATACGTAGTAAATTGGGTGCTGCTTTGAACTCTTGGTCACCACAGGATCGCTCGGCACGCGCCATGCTGACGCCCTGGAAGGGCGCTTTCTGTGAGGAAGAGCTGCTGCACTTTCTGCTGCGTCACATTATACCCAAGCTGCAGTTGGTGCTCAGCGAGTTTATCATAAATCCGATGCAGCAAAATTTGGAGCTTTGGCATCAGGTTTGGGAGTGGCATGAACTTATTCCGCCTATGCATATGGCGCAGCTGCTGGATAAGTATTTCTTTCCACGCTGGATGCAGGTGCTGGTTATTTGGCTTAATCAATCACCCGATTATACGGAAATATCACGCTGGTATACCGGCTGGAAGAGCATGTTAAGTGAGCCAGTGTTGCGTGAGCCCTCGATTAAGGAGCATCTGCGTCGCGCCTTAGAAATGATGCATCGTGCATCAGACGCTTTGCTCAATCCTGCACAGGGTACACCTATTATAAGCCAGGCGCCCCCAGCGCCGGCGCAAGTGCTGCTCACACCCATTATGATGATGGATGTGCAGGCCGCACAGTTGGAATTCAAAGAGTTGGTCTCTCAAAAATGTGCCGAACTAGGCATCATCTTTGCGCCCTTACCCGGACGTCGCGAGCTAGGCAAACAGATTTTTCGCGTGGGCAAGCTATTTTGCTATATAGATCGCAATGTCTGTATGATCAGCGACAGCAGCTTTAGCAATTGGCAACCCGTTGCACTGACACAGCTGCTGGAGCGTGCTCAAACCGGCTAA
Protein Sequence
MSDNEYERFEITDYDLDNEFNINRPRRRQTKHQQIYGIWADDSDNDSGEDNSSGRRGRRGLGAGSSKAKDYTAPVNFVAGGIQQAGKKKTKNNEQTADKAAGSGSESADSDNARPAFGRKQSQLMNDDAPSSDSSAEEAQRAAANVARPTSSFKHKSHISSERNVGAWEQHTRGIGAKLLLQMGYEPGKGLGKDLQGISQPVQAHVRKGRGAIGAYGPEKTATVGGKAKPIKMDEDLRDAKESKEQMNKWKKGETRDKGAKRYYYKSVEEIIAKGQKSNHLLSEKLSKKLGNVPVIDMTGPEKRVLSGYHALAQTKVTVDETLYDVDASGKTDQPSAGCVFSMPELTHNLQLLVSQCEQEIIAIDKTERESTDRQAALQHELTKLQEIVHLERNHMNTLECVFARVEELSSNEGKLTLTRAQQLFLELQQDFAAEYKEFGLADLAAGVIAPLVKLELTEWRPLEQPTLHLELIKKWRGILQQEDSTEQPRNVFDPYSSLVWAGVIPSFRACADTWQPKLYQPMAALLDAWAPLLPTWVLDSVLEQLVLPRLTAGVRDWDPLTDTVPIHSWILPWHTILGTKLEETVYPQIRSKLGAALNSWSPQDRSARAMLTPWKGAFCEEELLHFLLRHIIPKLQLVLSEFIINPMQQNLELWHQVWEWHELIPPMHMAQLLDKYFFPRWMQVLVIWLNQSPDYTEISRWYTGWKSMLSEPVLREPSIKEHLRRALEMMHRASDALLNPAQGTPIISQAPPAPAQVLLTPIMMMDVQAAQLEFKELVSQKCAELGIIFAPLPGRRELGKQIFRVGKLFCYIDRNVCMISDSSFSNWQPVALTQLLERAQTG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01319024;
90% Identity
iTF_00335889;
80% Identity
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