Ccau015923.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chymomyza caudatula
Gene Symbol
sip1
Assembly
GCA_035041775.1
Location
JAWNKW010000209.1:621590-624306[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.5e-97 2.4e-93 312.8 12.8 3 275 422 688 420 688 0.98
2 2 0.32 3e+03 -2.4 0.0 158 190 701 732 693 742 0.54

Sequence Information

Coding Sequence
ATGTCAGACAACGAGTATGAGCGCTTTGAAATCACAGATTACGATTTGGATAATGAATTCAATATAAATAGACCACGTCGTCGGCACACGAAGCATCAACAGATATATGGAATTTGGGCAGACGACAGCGACAATGAAAGTGGCGAGGAAAACAACAGTGGACGCCGAGGTCGCCGAGGCTTAGGCGGCGGCAGTAGCAAAACCAAAGATTACACGGCGCCAGTAAGTTTTGTTGCCGGTGGCATTCAACAAGCTGGCaagaaaaagaacaaaaatgaGGAACAAAGTACCGAAAAAGGACACTCTGGCAGCGAGAATGATGACAGCGATGATGGGCGTCCTGCATTTGGACGCAAACCACCAGAGCTTATGGAGGACAGTGCGCATTCTTCAGACAGCTCATTGGAAGAGGCTCAAAGAGCGGCAGCAAACGTTGCTAGGCCTACATCCAGTTTTAAGCACAAGTCACACATTGCCAGTGAACGCAATGTAGGCGCCTGGGAGCAACACACCAGAGGCATtggtgcaaaacttttgcttcaAATGGGCTACGAGCCTGGCAAGGGCCTGGGCAAAGATCTGCAAGGCATATCGCAGCCGGTGCAGGCTCATGTCCGCAAGGGACGTGGTGCCATAGGCGCGTATGGACCTGAAGTTGCGGCCAGCGTGGGGGGAAAAGTCAAACCGATTAAAATGGACGAGGACGTGCGTGAGGCCAAGGAGTTCAAGGAGCAAATGAACAAGTGGAAGAAAGGCGGCAATGAAACGCGTGAAAAAGGGGCCAAGCGTTACTACTACAAGTCTGTGGAGGAAATTATtgccaaaggcaaaaaatCTGATCACTTGCTGTCCgaaaagctaagcaaaaaaCTGGGTAATGTGCCTGTTATAGATATGACGGGTCCAGAGCGTCGCGTTCTTAGCGGCTACCACGCTTTAGCTCAAACAAAAGTAACTGCCGATGAAACCCTGTACGATGTAGATGTCAGCAGCGGCAAGTCGGACCAGGTCAGCACCGGCTCTGTTTTCAGCATGCCCGAGCTAACACATAATCTGCAGTTGCTGGTCAGCCAGTGCGAGCAGGAAATCATTGCCATAGACAAAGCAGAGCGCGAATGCACAGACCGCCAAGCTGCGCTGGAACATGAGCACAGGAAATTTCTGGAGATTGCACATTTGGAACGTAATCATATGAGCACATTGGAGTGTGCTCTAGCTCGTGTTGAAGAGCTGAGCAGCAATGACGGAAAGCTAACGCTGACACGCGCCCAACAACTATTCCTAGAGCTGCAGCAAGACTACGCCGCCGAATATAAGGAGTTTGGTCTTGCTGATTTAGCTGCTGGCGTCATTGCGCCCTTGGTTAAACAGGAACTTTCGGACTGGCAGCCACTTGAGCAGCCCACTCTGCATTTGGACATAATTAAGAGATGGCGTGGCATACTGCAGCAAGATGGAAGCACAGAGCAGCCACGTAATGTCTTTGATCCCTACTCCTCGCTCATTTGGGCTGGTGTTATACCCTCCTTTCGGGCCTGTGCCGATACTTGGCAGCCGAAGAAGCATCAGCCAATGGCCGCACTGCTAGATGCTTGGGCGCCCATGCTGCCAACCTGGGTTCTTGACTCGGTGCTAGAGCAGCTTGTATTACCACGCTTGACTGCAGGCGTACGTGATTGGGATCCGTTGACCGATACCGTGCCCATACATAGCTGGATACTTCCCTGGCATGCTATACTAGGTAACAAGTTGGAGGAGACTATCTACCCGCAAATACGCAGCAAGCTAGGCGCGGCTTTGACGACTTGGTCACCACAGGATCGCTCGGCTCGAGCCATGCTTACGCCCTGGAAGGGCGCCTTCTGTGAGGAAGAGCTGCTGCACTTTTTGCTGCGTCATATTATACCCAAGCTGCAGGTGGTGCTTAGCGAGTTTATAATAAATCCGTTGCAGCAAAATTTGGAGCTCTGGCATCAAGTTTGGGAATGGCATGAGCTCATTCCACCCATGCACATGGCTCAGCTGCTggataaacatttttttccacGTTGGACGCAAGTGTTGGTTATGTGGCTCAATCAATCGCCCGATTATACGGAAATATCACGCTGGTATGCCGGCTGGAAAGGCATGTTAAGTGAGCCATTGCTGCGCGAGCCTTCCGTGAAGGAACATCTGCGCCGTGCCTTGGAAATGATGCACCGTGCCTCAGATGCTTTGCTTAATCCCGGACCCGCTGCGCCTATCATAAGCAGCGTACCCACACCGCCAGTCCCCGTGCTGCTCCCACCTGTCATGCTGGTAGATGTGCAGTCGGCTCAGTTGGAGTTCAAGGAGTTGGTCTCGCAAAAATGCGCTGAACTAGGCATAATCTTTGCGCCCTTGCCTGGACGTCGTGAGCTGGGCAAGCAGATTTATCGCGTGGGCAAACTATATTGCTATATAGATCGCAATGTTTGCATGATGAGTGATGGCACCTTCAGTAATTGGCAGCCCATTGCCTTGACGCAGCTCTTGGAACGCTCTCAAACGGGTGTCGTATAA
Protein Sequence
MSDNEYERFEITDYDLDNEFNINRPRRRHTKHQQIYGIWADDSDNESGEENNSGRRGRRGLGGGSSKTKDYTAPVSFVAGGIQQAGKKKNKNEEQSTEKGHSGSENDDSDDGRPAFGRKPPELMEDSAHSSDSSLEEAQRAAANVARPTSSFKHKSHIASERNVGAWEQHTRGIGAKLLLQMGYEPGKGLGKDLQGISQPVQAHVRKGRGAIGAYGPEVAASVGGKVKPIKMDEDVREAKEFKEQMNKWKKGGNETREKGAKRYYYKSVEEIIAKGKKSDHLLSEKLSKKLGNVPVIDMTGPERRVLSGYHALAQTKVTADETLYDVDVSSGKSDQVSTGSVFSMPELTHNLQLLVSQCEQEIIAIDKAERECTDRQAALEHEHRKFLEIAHLERNHMSTLECALARVEELSSNDGKLTLTRAQQLFLELQQDYAAEYKEFGLADLAAGVIAPLVKQELSDWQPLEQPTLHLDIIKRWRGILQQDGSTEQPRNVFDPYSSLIWAGVIPSFRACADTWQPKKHQPMAALLDAWAPMLPTWVLDSVLEQLVLPRLTAGVRDWDPLTDTVPIHSWILPWHAILGNKLEETIYPQIRSKLGAALTTWSPQDRSARAMLTPWKGAFCEEELLHFLLRHIIPKLQVVLSEFIINPLQQNLELWHQVWEWHELIPPMHMAQLLDKHFFPRWTQVLVMWLNQSPDYTEISRWYAGWKGMLSEPLLREPSVKEHLRRALEMMHRASDALLNPGPAAPIISSVPTPPVPVLLPPVMLVDVQSAQLEFKELVSQKCAELGIIFAPLPGRRELGKQIYRVGKLYCYIDRNVCMMSDGTFSNWQPIALTQLLERSQTGVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01319024;
90% Identity
iTF_00335889;
80% Identity
-