Cfus003408.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chymomyza fuscimana
Gene Symbol
sip1
Assembly
GCA_949987675.1
Location
OX465088.1:53578533-53581247[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 9.3e-95 8.2e-91 304.9 14.7 3 275 442 708 440 708 0.97
2 2 0.17 1.5e+03 -0.9 0.0 157 189 720 751 713 763 0.52

Sequence Information

Coding Sequence
ATGTCGGACAACGAGTATGAGCGCTTTGAAATCACAGACTACGACTTGGATAATGAATTTAATATAAACAGACCGCGTCGTAGGCATACCAAACATCAGCAGATTTATGGCAAgctaaaattgattttttgtgttaaaaacaattataacCATTTTGTTAAAAGTGTAGGCATTTGGGCAGACGACAGCGACAATGAAAGCGGAGAGGAAAACAGCAGCGGTCGTCGAGGACGCCGTGGTCTAGGCGGTGGCAGCAGCAAAGCCAAAGATTATACAGCGCCGGTAAGTTTTGTAGCCGGTGGCATTCAACAAGCTggcaagaaaaaaatcaaaaatgaagAACAAAGCGCCGATAAAGGATCCGCCTCTGGCAGCGAGAGTGCTGACAGCGATGATGCACGTCCTGCGTTTGGACGCAAGCAGCCGCAGCTTATGGACGACGACGCGCAGTCCTCAGACAGCTCAGCAGAGGAGGCTAAGCGGGCGGCGGTCAACGTGGCTAGACCTACATCCAGCTTTAAGCACAAATCGCATATATCCAGTGAACGCAATGTAGGTGCCTGGGAGCAACACACCAGAGGCATTGGTGCGAAACTTTTGCTACAAATGGGCTATGAGCCCGGCAAGGGTCTGGGCAAAGATCTGCAAGGTATATCGCAGCCGGTGCAGGCTCATGTACGTAAGGGACGCGGTGCCATAGGCGCCTATGGACCAGAAGTAGCAGCCAGCGTGGGCGGCAAAGCCAAACCGATTAAAATAGACGAGGACGTGCGTGAGACCAAGGAGTTCAAGGAGCAAATGAACAAGTGGAAGAAAGGCGGCAATGAAACGCGTGAAAAGGGCGCCAAGCGTTACTACTACAAATCAGTGGAGGAAATCATTGCCAAAGGCAAGAAGTCTAGTCATTTGTTATCGgaaaaactaagcaaaaaacTGGGCAATGTACCTGTCATAGACATGACGGGCCCAGAACGGCGCGTTCTTAGCGGTTATCATGCTTTGGCGCAAACCAAAGTAACCGTCGATGAGACTCTTTACGATGTGGATGCTAGTGGCAAGACGGATCAGCCCAGCGCCGGCTCCGTTTTTAGCATGCCCGAGCTGACGCATAATCTACAATTGCTGGTTAGCCAATGCGAGCAGGAAATCATTGCCATAGACAAGGCAGAACGAGAGAGCACAGATCGTCAAGCTGCGCTGGAACATGAGCTTAAGAAATTGCAAGAAATTGTGCATCTTGAACGCAATCACATGAGCACCTTAGAGTGTGTTTTTTCGCGTGTGGAGGAGCTGAGCAGCAATGAGGGCAACCTAACTCTGACACGCGCTCAACAACTATTCCTAGAGCTGCAACAAGATTATGCTGCCGAATATAAGGAGTTTAGTTTGGCGGATTTAGCGGCTGGCGTTATCGCGCCCTTGGTTAAGCAGGAACTATCGGAATGGCGACCACTTGAGCAGCCCACGCTGAATCTGGAGCTAATCAAGAGATGGCGCGGCATTTTGCAGCAAGAGGATAGCACAGACCAGCCACGCAATGTCTTTGATCCCTACTCCTCGCTTATTTGGGCTGGTGTCATACCCTCGTTTCGCGCCTGCGCTGATACTTGGCAGCCAAAGCTGCATCAGCCAATGGCCGCGCTGTTGGACGCTTGGGCGCCACTTCTGCCCACCTGGGTGCTGGATTCGGTACTAGAGCAGATAGTGCTGCCGCGCTTGACCGCAGGCGTGCGTGATTGGGATCCGCTGACCGACACTGTGCCCATACATAGCTGGATATTACCCTGGCATGCCATACTGGGTAATAAGCTGGAGGAGACTATATATCCGCAAATACGCAGCAAATTGGGTGCGGCTTTGACCTCTTGGTCCCCTCAGGATCGCTCGGCACGTGCCATGCTTACGCCCTGGAAGGGCGCTTTTTGTGAGGAAGAGCTGCTGCACTTTTTGCTGCGTCACATTATACCCAAACTACAGGTGGTGCTTAGCGAGTTTATTGTAAATCCACTACAGCAAAATCTGGAGCTCTGGCATCAGGTTTGGGAATGGCATGAACTCATTCCGCCCATGCATATGGCTCAGCTGctggataaatatttttttccacgCTGGATGCAGGTGCTGGTCATGTGGCTCAATCAATCGCCCGATTACACGGAAATATCACGTTGGTATACCGGCTGGAAGAGCATGTTAAGTGAGCCAGTGCTGCGCGAGCCCTCGGTGAAGGAACATCTGCGCCGTGCCTTGGAAATGATGCATCGCGCCTCCGATGCTTTGCTTAATCCCGCACAGGCTTCGCCTATTATAAGCAGCGTACCCACAGCGCCTGCCCCCGTGCTGCTCACACCTGTAATGATGGTGGATGTGCAGTCCGCGCAGTTGGAGTTCAAAGAGTTGGTCTCTCAAAAATGCGCTGAACTTGGCATCATCTTTGCCCCCTTGCCAGGACGTCGTGAGCTGGGCAAACAAATCTATCGCGTGGGCAAGCTATATTGCTATATAGATCGCAATGTTTGCATGATGAGCGACAGCACATTTAGCAATTGGCAGCCGGTTGCCCTGACACAGCTGTTGGAACGCGCTCAAAACGGTGCCGTATAA
Protein Sequence
MSDNEYERFEITDYDLDNEFNINRPRRRHTKHQQIYGKLKLIFCVKNNYNHFVKSVGIWADDSDNESGEENSSGRRGRRGLGGGSSKAKDYTAPVSFVAGGIQQAGKKKIKNEEQSADKGSASGSESADSDDARPAFGRKQPQLMDDDAQSSDSSAEEAKRAAVNVARPTSSFKHKSHISSERNVGAWEQHTRGIGAKLLLQMGYEPGKGLGKDLQGISQPVQAHVRKGRGAIGAYGPEVAASVGGKAKPIKIDEDVRETKEFKEQMNKWKKGGNETREKGAKRYYYKSVEEIIAKGKKSSHLLSEKLSKKLGNVPVIDMTGPERRVLSGYHALAQTKVTVDETLYDVDASGKTDQPSAGSVFSMPELTHNLQLLVSQCEQEIIAIDKAERESTDRQAALEHELKKLQEIVHLERNHMSTLECVFSRVEELSSNEGNLTLTRAQQLFLELQQDYAAEYKEFSLADLAAGVIAPLVKQELSEWRPLEQPTLNLELIKRWRGILQQEDSTDQPRNVFDPYSSLIWAGVIPSFRACADTWQPKLHQPMAALLDAWAPLLPTWVLDSVLEQIVLPRLTAGVRDWDPLTDTVPIHSWILPWHAILGNKLEETIYPQIRSKLGAALTSWSPQDRSARAMLTPWKGAFCEEELLHFLLRHIIPKLQVVLSEFIVNPLQQNLELWHQVWEWHELIPPMHMAQLLDKYFFPRWMQVLVMWLNQSPDYTEISRWYTGWKSMLSEPVLREPSVKEHLRRALEMMHRASDALLNPAQASPIISSVPTAPAPVLLTPVMMVDVQSAQLEFKELVSQKCAELGIIFAPLPGRRELGKQIYRVGKLYCYIDRNVCMMSDSTFSNWQPVALTQLLERAQNGAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01319024;
90% Identity
iTF_00335889;
80% Identity
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