Lsab001959.1
Basic Information
- Insect
- Lissocephala sabroskyi
- Gene Symbol
- sip1
- Assembly
- GCA_037075105.1
- Location
- JBAMCP010000199.1:63882-66592[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.2e-94 7.6e-90 301.9 14.3 4 275 423 688 420 688 0.97 2 2 0.06 5.5e+02 0.6 0.0 156 190 699 732 692 743 0.62
Sequence Information
- Coding Sequence
- ATGTCGGACAACGAGTACGAACGTTTCGAAATAACCGACCAAGATTTGCAAAACGAGTTCAACATAAACAGACCGCGtcgccggcaaacaaaaaaccagcaaattTATGGCATTTGGGCCGAAGACAGCGACAACGAGGGCGCCGACGATGAAGCCCCCTCCCGCCGCAGTCGCCGTggccccaccaccagctccaAAGACTACACGGCCCCGGTGAACTtcgtggccggcggcatcCAGCAAACCGGCAAGAAAAAAGACAAGACCGAGGCGACTGAGCGCCCGCCAATTTCCGGCAGCGAcgaggacagcggcggcgacaccAGACCCTCCTTTGGCCGCAAACAGCCCCAACTCAAAGACTTTGCCGGCAGCCCGCATTCCTCCGACAGCTCCGCCGACGAGGCCGAGCaccgggcggcagcggccgccagcgTCAGCCGGCCCACCTCCAGCTTCAAGCACAAGTCGCACATATCCAGCGACCGCCATGTGGGCGCCTGGGAGCAGCACACCCGCGGCATAGGCGCCAAGCTGCTCCTCCAAATGGGCTACGAGCCCGGCAAGGGCCTGGGCAAGGACCTCCAGGGCATCTCGCAGCCGGTCCAGGCCCACGTGCGCAAGGGCCGTGGGGCCATAGTCGCCTATGGCCCCGAGACAGCAGCCAGCATAGGCGGCAAGCCCAAGCCAGCCAAAGTCGACGAGGACGTGCGCGAGGCCCTCGAGTTCAAAGAGCAGATGAACCGCTGGAAGAAGGGCGGCTCTAGCGAGGTCAAGGAGAAGTCCTCCAAGCGCTACTACTACAAATCCGTGGAGGAGGTCATAGCCAAGGGCAAGAAATCCGACCATCTACTCTCCGAGAAGCTCAGCAAGAAGCTGGGCAATGTCCCGGTCATTGACATGACGGGCCCCGAACGCCGCGTCCTCAGCGGCTACCATGCCCTGGCCCAGACCAAGGTCACCGCCGAGGAGACGCTCTACGACGCAGACGCCAAGCCGGACCAGCCGGCTGCCCCCGCCTCGGTGTTCGCCATGCCCGAGCTGATGCACaacctgcagctgctggtgagCCAGTCCGAGCAGGAGATCATTGCCATAGACAAGGCCGAGCGCGAGTGCTCCGACCGCCAGGCGGCCCTCGAGCACGAATACCAGAAGCTCCAGGAGATTGTCCAACTCGAGCGCAATCACATGGACACCCTGGAGGCAGCGCTGGCCCGCGTGGAAGAGCTGAGCAGCGGGGACTCTAACCTCGGCCTGGTCAGGGCCGAGAAGCTTTTCCTGGAACTGCAGCAGGATTACGCCGCGGAGTATATAGAGTTCGGCCTGGCCGACCTGGCAGCCGGCGTCATTGCCCCGCTGGTCAAGGCCGAGCTGTCCAGCTGGCAGCCTCTGGCCCAGCCCACCCAGCACTTGAATTTGTTGAAGAAATGGCGAGGCATCCTCCAGGAAGACTCCTCCACCGAGAAGCCCCGCAATGTCTTCGATCCCTACTCCTCCCTGATGTGGGCCGGTGTCATCCCCTCCTTCCGTTCCTGCGCCGACAGCTGGCAGCCCAAGCAGCACCAGCCCATGGCCGCCCTCCTCGATGCCTGGGCCCCGCTGCTGCCCACTTGGGTGCTGGACTCAGTGCTCGAGCAGCTGGTGCTGCCCCGCCTGGCGGCCGGCGTACGCGACTGGGATCCCCTCACCGACACTGTGCCCATCCACAGCTGGGTGCTGCCCTGGCACGCCATACTGGGCGGCAAACTGGAGGAGTCCATCTACCCGCAGATCCGCAGCAAACTGGGAGCCGCCCTGCAGAATTGGGCGCCCCACGATCGCTCTGCCCGGGCCATGCTGACGCCCTGGATGAGAGCCTTTCCCGACGAGCAGATGCTGCTGTTCCTGGTGCGCCACATCATCCCCAAGCTGCAGGTGGTGCTCAGCGAGTTCGTCATCAATCCCATCCAGCAAAACATGGAACCCTGGAACCAGGTGTGGGAGTGGCACGAGCTGATCCCCGCCCAGCAgatggcccagctgctggacaaATACTTCTTCCCCCGCTGGATGCAGGTGCTGGTCCTGTGGCTCAACCAGTCGCCGGACTACACGGAGATCTCCCGCTGGTACACCGGCTGGAAGAGCCTGCTAAGCGAGTCGGTGCTGCAGGAGCCGCCGATCAAAGAGCACCTACGCCGCGCCCTCGAGGTTCTCCATCGGGCCTCCGATGCTTTGCTCAATCCGGCAGCCGCCACGCCTATACTCAGCGGCATACCACAGCCCCCGCAGCCGCCAGTGCTAATGGCCCCGGTGCTGCTGATGGATGTCCAGCCGGCCCAGTTGGAGTTCAAGGAGTTGGTCTCCCAAAAGTGCGCCGAACTGGGCATTATCTTTGCCCCGCTGCCAGGCCGCCGCGAACTCGGCAAGCAGATTTACCGCGTGGGAAAGCTGTTTTGCTATATCGACCGGAACGTGTGCATGATCAGCGACAGCAGCCTCAGCAAATGGCAGCCGGTGGCGCTCCCCCAGCTGCTCGAACGCGCCCAGACGGGGCAATAA
- Protein Sequence
- MSDNEYERFEITDQDLQNEFNINRPRRRQTKNQQIYGIWAEDSDNEGADDEAPSRRSRRGPTTSSKDYTAPVNFVAGGIQQTGKKKDKTEATERPPISGSDEDSGGDTRPSFGRKQPQLKDFAGSPHSSDSSADEAEHRAAAAASVSRPTSSFKHKSHISSDRHVGAWEQHTRGIGAKLLLQMGYEPGKGLGKDLQGISQPVQAHVRKGRGAIVAYGPETAASIGGKPKPAKVDEDVREALEFKEQMNRWKKGGSSEVKEKSSKRYYYKSVEEVIAKGKKSDHLLSEKLSKKLGNVPVIDMTGPERRVLSGYHALAQTKVTAEETLYDADAKPDQPAAPASVFAMPELMHNLQLLVSQSEQEIIAIDKAERECSDRQAALEHEYQKLQEIVQLERNHMDTLEAALARVEELSSGDSNLGLVRAEKLFLELQQDYAAEYIEFGLADLAAGVIAPLVKAELSSWQPLAQPTQHLNLLKKWRGILQEDSSTEKPRNVFDPYSSLMWAGVIPSFRSCADSWQPKQHQPMAALLDAWAPLLPTWVLDSVLEQLVLPRLAAGVRDWDPLTDTVPIHSWVLPWHAILGGKLEESIYPQIRSKLGAALQNWAPHDRSARAMLTPWMRAFPDEQMLLFLVRHIIPKLQVVLSEFVINPIQQNMEPWNQVWEWHELIPAQQMAQLLDKYFFPRWMQVLVLWLNQSPDYTEISRWYTGWKSLLSESVLQEPPIKEHLRRALEVLHRASDALLNPAAATPILSGIPQPPQPPVLMAPVLLMDVQPAQLEFKELVSQKCAELGIIFAPLPGRRELGKQIYRVGKLFCYIDRNVCMISDSSLSKWQPVALPQLLERAQTGQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01319024;
- 90% Identity
- -
- 80% Identity
- -