Camo020423.1
Basic Information
- Insect
- Chymomyza amoena
- Gene Symbol
- sip1
- Assembly
- GCA_037043745.1
- Location
- JBAMAX010004362.1:84355-87072[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-95 3e-91 306.3 13.9 3 275 422 688 420 688 0.98 2 2 0.11 1.4e+03 -0.9 0.0 157 189 700 731 693 743 0.52
Sequence Information
- Coding Sequence
- ATGTCAGACAACGAGTATGAGCGTTTTGAAATCACAGACTACGACTTGGACAATGAATTCAATATAAACAGACCGCGTCGTCGTCATACCAAACATCAGCAGATTTACGGCATTTGGGCAGACGACAGCGACAATGAGAGCGGTGAGGAAAATAGCAGCGGACGTCGAGGACGCCGTGGTCTAGGCGGTGGCAGCAGCAAAGCCAAAGATTATACAGCGCCGGTAAGTTTTGTTGCCGGTGGCATTCAACAAGCTggcaagaaaaaaatcaaaaatgatgAACAAAGCGCCGATAAAGGGTCAGCCACTGGCAGCGACAGTGCTGATAGCGATGATGCACGTCCTGCGTTTGGACGCAAGCAGCCGCAGCTTATGGACGACGACGCGCAGTCGTCAGACAGCTCAGCAGAAGAGGCTAAGCGAGCAGCAGTAAACGTGGCTAGACCTACATCCAGCTATAAACACAAGTCACATATATCCAGTGAACGCAATGTGGGTGCCTGGGAGCAACACACCAGAGGCATTGGTGCGAAACTTTTGCTACAAATGGGCTATGAGCCCGGCAAGGGTCTGGGCAAAGATCTGCAAGGTATATCGCAGCCGGTGCAGGCTCATGTGCGTAAGGGACGCGGCGCCATAGGCGCCTATGGACCAGAAGTAGCGGCCAGCATTGGCGGCAAAGCCAAACCGATTAAAATTGACGAGGACGTGCGTGAGGCCAAGGAGTTCAAAGAGCAAATGAACAAGTGGAAGAAAGGTGGCAATGAAACGCGTGAAAAGGGCGCTAAGCGTTACTACTACAAATCAGTGGAGGAAATCATTGCCAAAGGCAAAAAGTCTAGTCATTTGTTATCGgaaaaactaagcaaaaaatTGGGCAATGTACCTGTCATAGACATGACGGGCCCAGAACGGCGCGTACTTAGCGGTTATCACGCTTTGGCCCAGACCAAAGTAACCGTCGATGAGACGCTTTACGATGTGGATGCTAGTGGCAAGACGGACCAGCCCAGCGCCGGCTCCGTTTTTAGCATGCCCGAGTTGACGCATAATTTGCAATTGCTGGTTAGCCAATGCGAGCAGGAAATCATTGCCATAGACAAAGCAGAACGCGAGTGCACAGATCGGCAAGCTGCGCATGAACAtgagcttaaaaaattacaagaaattGTGCATCTGGAACGCAATCACATGAGCACCTTAGAGTGTGTTTTTTCGCGTGTGGAGGAGCTGAGCAGTAATGAGGGCAACCTAACTCTGGCACGCGCTCAACAGCTGTTTCTAGAACTGCAACAAGATTATGCTGCCGAATATAAGGAATTTGGTTTGGCGGATTTGGCGGCGGGCGTTATTGCGCCCTTGGTTAAGCAGGAACTATCGGATTGGAAACCACTTGAGCAGCCCACGCTGCATTTAGACCTAATCAAGAGATGGCGCGGTATTTTGCAGCAAGAGGACAGCACAGAACAGCCACGCAATGTGTTTGATCCCTACTCCTCGCTTATTTGGGCTGGTGTCATACCCTCGTTTCGTGCTTGCGCTGATACCTGGCAACCTAAGCTGCATCAGCCAATGGCCGCGCTGTTGGACGCTTGGGCGCCACTGCTGCCCACCTGGGTGCTGGATTCGGTGCTAGAGCAGCTAGTGCTGCCGCGCTTGACCGCAGGCGTGCGTGATTGGGATCCGCTGACCGACACTGTACCCATACATAGCTGGATATTACCCTGGCATGCCATACTGGGTAATAAGCTGGAGGAGACCATATATCCGCAAATACGCAGCAAATTGGGTGCGGCTTTGACCTCTTGGTCCCCCCAGGATCGCTCGGCGCGTGCCATGCTAACGCCCTGGAAGGGCGCTTTTTGTGAAGAAGAGCTGCTGCTCTTTTTGCTGCGTCACATTATACCCAAACTACAGGTGGTGCTTAGCGAGTTTATTATAAATCCGCTGCAGCAAAATCTGGAGCTCTGGCATCAGGTTTGGGAATGGCATGAACTCATTCCGCCCATGCATATGGCTCAGCTGctggataaatatttttttccacgCTGGATGCAGGTGCTGGTCATGTGGCTCAATCAATCGCCCGATTACACGGAAATATCACGTTGGTATACCGGCTGGAAGAGCATGTTAAGTGAGCCAGTGCTGCGCGAGCCCTCGGTTAAGGAACATCTGCGCCGTGCTCTGGAAATGATGCATCGTGCCTCCGACGCTTTGCTTAATCCCGCACAGGCTACGCCTATTATAAGCAGCGTACCCACAACGCCTGCCCCCGTGCTGCTCACACCTGTAATGATGGTGGATGTACAGTCCGCGCAACTGGAGTTCAAAGAGTTGGTCTCTCAAAAATGCGCTGAACTTGGCATCATCTTTGCCCCCTTGCCAGGACGTCGTGAGCTGGGCAAACAAATCTATCGCGTGGGCAAGCTTTATTGCTATATAGATCGCAATGTTTGCATGATGAGCGACAGCTCCTTTAGCAATTGGCAGCCCGTTGCTTTGGCGCAGATGTTGGAACGCGCTCAAAACGGTGCCGTATAA
- Protein Sequence
- MSDNEYERFEITDYDLDNEFNINRPRRRHTKHQQIYGIWADDSDNESGEENSSGRRGRRGLGGGSSKAKDYTAPVSFVAGGIQQAGKKKIKNDEQSADKGSATGSDSADSDDARPAFGRKQPQLMDDDAQSSDSSAEEAKRAAVNVARPTSSYKHKSHISSERNVGAWEQHTRGIGAKLLLQMGYEPGKGLGKDLQGISQPVQAHVRKGRGAIGAYGPEVAASIGGKAKPIKIDEDVREAKEFKEQMNKWKKGGNETREKGAKRYYYKSVEEIIAKGKKSSHLLSEKLSKKLGNVPVIDMTGPERRVLSGYHALAQTKVTVDETLYDVDASGKTDQPSAGSVFSMPELTHNLQLLVSQCEQEIIAIDKAERECTDRQAAHEHELKKLQEIVHLERNHMSTLECVFSRVEELSSNEGNLTLARAQQLFLELQQDYAAEYKEFGLADLAAGVIAPLVKQELSDWKPLEQPTLHLDLIKRWRGILQQEDSTEQPRNVFDPYSSLIWAGVIPSFRACADTWQPKLHQPMAALLDAWAPLLPTWVLDSVLEQLVLPRLTAGVRDWDPLTDTVPIHSWILPWHAILGNKLEETIYPQIRSKLGAALTSWSPQDRSARAMLTPWKGAFCEEELLLFLLRHIIPKLQVVLSEFIINPLQQNLELWHQVWEWHELIPPMHMAQLLDKYFFPRWMQVLVMWLNQSPDYTEISRWYTGWKSMLSEPVLREPSVKEHLRRALEMMHRASDALLNPAQATPIISSVPTTPAPVLLTPVMMVDVQSAQLEFKELVSQKCAELGIIFAPLPGRRELGKQIYRVGKLYCYIDRNVCMMSDSSFSNWQPVALAQMLERAQNGAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01319024;
- 90% Identity
- iTF_00337514; iTF_00338328; iTF_00339139; iTF_00336722;
- 80% Identity
- -