Rpad003136.1
Basic Information
- Insect
- Rhopalosiphum padi
- Gene Symbol
- -
- Assembly
- None
- Location
- scf7180000008048.1084828:949451-953638[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0074 0.94 10.6 0.3 2 23 419 441 418 441 0.94 2 14 0.096 12 7.1 0.2 2 21 477 496 476 499 0.88 3 14 0.04 5 8.3 0.0 3 23 506 527 505 527 0.96 4 14 0.0018 0.23 12.5 6.0 2 23 530 551 529 551 0.97 5 14 1.7e-05 0.0022 18.9 3.6 1 23 557 579 557 579 0.98 6 14 4.6e-05 0.0058 17.5 3.3 1 23 585 608 585 608 0.98 7 14 0.17 22 6.3 2.7 5 23 620 638 618 638 0.97 8 14 2.4e-05 0.003 18.4 2.0 2 23 644 666 643 666 0.97 9 14 0.084 11 7.3 2.4 2 23 682 702 681 702 0.96 10 14 3.1e-06 0.00039 21.2 1.4 1 22 708 729 708 730 0.92 11 14 0.013 1.6 9.9 1.4 1 23 738 760 738 760 0.98 12 14 0.00035 0.044 14.8 5.4 1 23 766 788 766 788 0.97 13 14 6.2e-07 7.7e-05 23.4 4.0 1 23 795 817 795 817 0.99 14 14 0.0011 0.14 13.2 10.2 1 23 823 845 823 846 0.95
Sequence Information
- Coding Sequence
- ATGTTGGGCGCTTCGTTTTATCGAGAAATCGATGTATCAACGAAAAAAAATGGTCTAACAGCTTGGCAATTCTGCATTTTGTTTGGACACGTCGGCCTTGGAAATGTGGCAACACTGCTCGCTATTGATATTTTCTTTTCTCCATCATGCCATTCTGTGGCCGTTACGGCCATAATCGTTCCATTATTCTTCCTCAACTCTATTAAGACTGAAAATCGAATATCTCTTCCTGTTCATTTGCATACACATCCAAAAAAACAAGTCATAAAAGCCTTATTAACCCTAACCAATCAAATATCTCCTTCAAAATCAGACAAATCATCAGAATCAGATCAAGAAAACCTATCAGATGACAGTAGCTCATCTTCAGATTCATCAGAAGGTGGATACACCTTTATTATACCAGATAGAGTTAATAATGCAAATAAAAATACCTTAAATGTATCAGAAGCGGTTAATGAAACCAGCAGAACTAACTTCAATATATCAGATGCTGTTAATTCTGGTCTTAATAATGAGGATAGAAATAGTCCTAACATTTGTCCATCACCCAAAAGCCAAAATAGTCAAGCACTTTCAGAACTACGAGATGCTCTTGAAGATCATCCCGATGATGACATTGATATTGAAGATAACAATGTTACTTTTGAGGATGACTATCCTCCAGAATTTGAAGACCAACAAGATTGCAGTAATGGTGGTTTTCAAGGAGGATCAAATGATTCAACTCAACATCATGAAATGTCGGAAGAAACAGGCTCATCTGTAGCAGGTCATTTTAATGATCCATTTCAATCAAATGGTAATTTACTTGAAAATGAAGAATATATGTCACATTACTTTTACTCCAGTGAAAATGCTCGTATATCACATACTGATCCAGATCCTCAACTTAACCCTCCTCAATATAGTACTCTTACTACAATGGAGCTACATCCAGAATATTTATCCTCAAACCATCAAGAACATAATTTAACTTTAGATATTCAAACTGATGAACTTATGCCAGCTCATGGAGAATTATCTGGCCAAGAGAGTTTAGAACCCCCCGAACCAATACTTGCATCTATATGGACAATGAAAAGTAGTGATGATATTCTGCCTCAAACTAGTACTGCATGGGATGATACTGTACATGAAGTAAGTACTGCTGCTAGAAATTTAATGTGTTTAAAAAACAGAGAAGAAATCCCTAAAGAAGATACTAAAGAAATAATAGAAAAAAAAGAAGTAAAACCACTTTTAGGAAAATTAATTTGTCCGTATTGCAAATTAAAGTTCAATGATGTTAAGTCACGTAAAGCACATATTAATGAAGAGCATAAAAATGAAGAAGGCGTGAAGAAAGGTTTGATGTACATTAAGCCATTTACAGAAAAAATAGAAACTGATTTGGATGAATCGGATCAAACAACTACTTTGAAAGTGGAATGTGGCATTTGCAATCAACCTTTCGAAAATTATATTCATATGACATTGCATTTTATTGATACTCATAAAGATAAGAATAATTTATGTCCAACGTGTAACATAGTATTTCCTATGATAACAGATTTTCGAGAACATATACTAAATGTTCATCCATTGACATGTAGTTTCTGTTCAAGGAAATTTCATTCCCAATTTAATTTAACCACACATTTGAAACGTCATCTTCAAATTAAGCCATATGTCTGTGAACAATGTCATAAATGTTTCGTCAGTCGTGTTAAACTTCAAGATCATATGAATGGACATCTCAATATAAAACCATACTCTTGTTCTATGTGTGATCAAGCTTTTAGTTGCAAATCAAATTTAAATAGTCATATTCGTAAACAACATCAAGCTAATGGAACTCCAAAAGATTTTTATTGTCATTGTGGAGAGGTATTTCATTCTTTAAAAAAGCTTGCATGGCATAAGGAAACTCACGAAGATAAACCAAAACAATGTCCATGGTGCTCAGAACGTTTTGTACATTTAACATCATTGACTAGACATATAAGGCGTTCACATGATTCATCATATTTACCTACAAAAGATCGTGATTTTGAAAACATGACCTGTCATATATGTAATAATACATTTTTACGTAAATCTTTTGCTACTCATATGCTTATTCACAAAGATTTAAGACCTTATTCTTGCAATATATGCAACCGATCATTTCGGACTAAATGGAATTTAAGAATGCATCAGTGGACTCATATGTCACGTACGCACAAACCTTTTAAATGTACCCAATGCAAAAGTGCATTTTATCTCAAACATGAATGGGAAGCTCATGTACGTGCACACAATGGTGTTCGTCCATTTACATGCAATGAATGTGGAAAACAATTTATTAGGAAAAAGCATTGTATGAGACATATGGCAGAACATGAAGAAGGCAATCGTTCATATGAATGCAAAGAATGTGGCAAAAGGTTCCATCGTAGTTATTATCTGACAGATCACATAAAGACACACACCGGACAAAAGCCTCATACATGTCATATATGCGGTAAAACAACTAGCTCTAAGTCAAATCACAACAAACATGTCCGTACACATCATGCAAGAGAAACAATAAACACTGAAGGTTAA
- Protein Sequence
- MLGASFYREIDVSTKKNGLTAWQFCILFGHVGLGNVATLLAIDIFFSPSCHSVAVTAIIVPLFFLNSIKTENRISLPVHLHTHPKKQVIKALLTLTNQISPSKSDKSSESDQENLSDDSSSSSDSSEGGYTFIIPDRVNNANKNTLNVSEAVNETSRTNFNISDAVNSGLNNEDRNSPNICPSPKSQNSQALSELRDALEDHPDDDIDIEDNNVTFEDDYPPEFEDQQDCSNGGFQGGSNDSTQHHEMSEETGSSVAGHFNDPFQSNGNLLENEEYMSHYFYSSENARISHTDPDPQLNPPQYSTLTTMELHPEYLSSNHQEHNLTLDIQTDELMPAHGELSGQESLEPPEPILASIWTMKSSDDILPQTSTAWDDTVHEVSTAARNLMCLKNREEIPKEDTKEIIEKKEVKPLLGKLICPYCKLKFNDVKSRKAHINEEHKNEEGVKKGLMYIKPFTEKIETDLDESDQTTTLKVECGICNQPFENYIHMTLHFIDTHKDKNNLCPTCNIVFPMITDFREHILNVHPLTCSFCSRKFHSQFNLTTHLKRHLQIKPYVCEQCHKCFVSRVKLQDHMNGHLNIKPYSCSMCDQAFSCKSNLNSHIRKQHQANGTPKDFYCHCGEVFHSLKKLAWHKETHEDKPKQCPWCSERFVHLTSLTRHIRRSHDSSYLPTKDRDFENMTCHICNNTFLRKSFATHMLIHKDLRPYSCNICNRSFRTKWNLRMHQWTHMSRTHKPFKCTQCKSAFYLKHEWEAHVRAHNGVRPFTCNECGKQFIRKKHCMRHMAEHEEGNRSYECKECGKRFHRSYYLTDHIKTHTGQKPHTCHICGKTTSSKSNHNKHVRTHHARETINTEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01350309; iTF_01167914; iTF_01038677; iTF_00019606; iTF_00973241; iTF_00134770; iTF_00463542; iTF_01305048; iTF_00135623; iTF_00136336; iTF_01033233; iTF_00184819; iTF_01304378; iTF_01032380; iTF_01329216; iTF_00942105;
- 90% Identity
- iTF_01305048;
- 80% Identity
- -