Acrc008672.1
Basic Information
- Insect
- Aphis craccivora
- Gene Symbol
- Znf335
- Assembly
- GCA_009835225.1
- Location
- VUJU01002023.1:1693-6419[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.007 0.79 11.0 0.5 2 23 359 381 358 381 0.94 2 14 0.15 17 6.8 0.1 2 23 417 439 416 439 0.88 3 14 0.028 3.1 9.1 0.1 3 23 446 467 445 467 0.96 4 14 0.0021 0.23 12.7 5.0 2 23 470 491 469 491 0.96 5 14 3.7e-05 0.0041 18.2 3.7 1 23 497 519 497 519 0.98 6 14 4.1e-05 0.0046 18.1 2.9 1 23 525 548 525 548 0.98 7 14 0.32 36 5.8 2.0 5 23 560 578 558 578 0.95 8 14 6.8e-05 0.0077 17.3 1.8 2 23 584 606 583 606 0.97 9 14 0.074 8.3 7.8 0.7 2 23 622 642 621 642 0.96 10 14 3.7e-06 0.00041 21.3 1.4 1 22 648 669 648 670 0.92 11 14 0.015 1.7 10.0 1.4 1 23 678 700 678 700 0.98 12 14 0.00041 0.046 14.9 5.4 1 23 706 728 706 728 0.97 13 14 1.8e-06 0.0002 22.3 3.9 1 23 735 757 735 757 0.99 14 14 0.0013 0.14 13.3 10.2 1 23 763 785 763 786 0.95
Sequence Information
- Coding Sequence
- atgagtCAATCATGTTGTCCAGTGTGCACATTGTACTTAAGGCCAGGAATATCTCTTCCTGTTCATTTGCATACACATCCAAAAAAACAAGTCATAAAAGCTTTATTAACCCTAACCAATCAAGCATCCCCTTCAAAACCAGACAAATCAGATTCAGATCAAGATCACCTATCAGATGACAGTAGCTCATCTTCAGATTCATCAGAAGGCGGATACACCTTTATTATACCAGATAGAGTTAAAAATACCTCAAATGTACCAGAGGCGATAAATGAAACCAGCAGAACTAACTTCAATATATCAGATGCTGTTAATTCTGGTCTTAATAATGTGGATAGAAATTGTGCCAACAACTGTTCATCACCCAAAAGCCAAAATAGCCAAGCACTTTCAGAACTACGAGATGCTCTTGAAGATCATACCGAGGATGACCTTGACATTGAAGATAACAATGTTACTTTTGAAGAAGATGACTATCCTCCAGAATTTGAGGTAGACCAACAAGATTGCAGTAATGGTGGTTTTCAAGGAGGATCAAATGAATCAACTCAACATCATGAAATGTCAGAAGAAACAGGCTCATCAGTGATAGGTCAAATTAATGATCCATTTCAATCAAACGGTAATGTACTTGAAAATGAAGAATATATgtcacattatttttactcgAGTGAAAATGCTCGTATATCACATACTGATCCAGATCCTCAACTTAACCCTCCTCAATATAGTACTCTTACAACTATGGAATTACATCCAGAATATTTATCCGCAAACCATCAAGAACATAATTTAACCTTGGATATTCAAACTGATGAACTTATGCCAGCTCATGGAGAATTATCGGGCCAAGAGAGTTTAGAACCCCCAGAACCGATACTTGCTTCTATATGGACAATGAAAAGTAGTAATGATGTTCTGCCTCAAACTAGTACTGCTTGGGATGATACTGTACATGAAGTTAGTACTGCTGCTAGaaatttaatgtgtttaaaaaacagAGAAGAAGTACCCAAAGAAGATACTAAAGAAATAATAGAGAAAAAAGAAGTGAAACCACTGTtaggaaaattaatttgtccGTATTGCAAATTAAAGTTCAATGATACTAAGACACGTAAAGCACATATCAATGaagaacataaaaatgaaGAAGGCGTGAAAAAAGGTTTAATGTACATTAAACCATTTTCAGCTAAAATAGAAACTGATTTGGACGAATCAGCTCAACCAACTATTCTTAAAGTGGAATGTGGCATTTGCAATCAACCTttcgaaaattatattcaaatgacATTGCATTTTATTGAAACTCATAAAgatAAGAACAATTTATGTCCAACATGTAACACAGTATTTCCTATGATAACAGATTTTCGAGAACATATACTAAATGTTCATCCATTGATATGTAGTTTCTGTTCAAGAAAATTTCATtcccaatttaatttaacaacacATTTGAAACGTCATCTTCAAATTAAGCCATATGTCTGTGAACAATGTCATAAATGTTTTGTCAGTCGTATTAAACTTCAAGATCATATGAATGGTCATCTCAATATAAAACCATACTCTTGTTCTATGTGTGATCAAGCTTTTAGTtgcaaatcaaatttaaacagtCATATACGTAAACTACATCAGGCTAATGCAACTCcaaaagatttttattgtCATTGTGGAGAGgtatttcattcattaaaaaaGCTTGCATGGCATAAGGAAATTCACGAAGATAAACCAAAACAATGCCCATGGTGCTCAGAGCGTTTTGTACATGTAACATCATTGACTAGGCATATAAGGCGTTCACATGATTCATCTTATTTACCTACAAAAGATCGTGATTTTGAAAACATGACTTgtgatatatgtaataatacatttttacgtaAATCTTTTGCTACTCACATGCTTATTCATAAAGATTTGAGACCTTATTCTTGCAATATATGCAACCGATCATTTCGGACTAAATGGAATTTAAGAATGCATCAGTGGACTCATATGTCACGTACACACAAACCTTTTAAATGTACCCAGTGCAAAAGTGCATTTTATCTTAAACATGAATGGGAAGCTCATGTACGTGCACACAATGGTGTTCGTCCATTTACATGCAATGAATGtggaaaacaatttattaggaAAAAACACTGTATGAGACATATGGCAGAACACGAGGAAGGCAATCGAGCATATGAATGCAAAGAATGTGGCAAAAGGTTCCATCGTAGTTATTATCTGTCAGATCACATAAAGACACATACTGGACAAAAACCTCATACATGTCATATATGCGGCAAAACAACTAGTTCTAAGTCAAATCACAACAAACATGTCCGTACACACCATGCAAGAGAATCAATAAACACTGAAGGTTAA
- Protein Sequence
- MSQSCCPVCTLYLRPGISLPVHLHTHPKKQVIKALLTLTNQASPSKPDKSDSDQDHLSDDSSSSSDSSEGGYTFIIPDRVKNTSNVPEAINETSRTNFNISDAVNSGLNNVDRNCANNCSSPKSQNSQALSELRDALEDHTEDDLDIEDNNVTFEEDDYPPEFEVDQQDCSNGGFQGGSNESTQHHEMSEETGSSVIGQINDPFQSNGNVLENEEYMSHYFYSSENARISHTDPDPQLNPPQYSTLTTMELHPEYLSANHQEHNLTLDIQTDELMPAHGELSGQESLEPPEPILASIWTMKSSNDVLPQTSTAWDDTVHEVSTAARNLMCLKNREEVPKEDTKEIIEKKEVKPLLGKLICPYCKLKFNDTKTRKAHINEEHKNEEGVKKGLMYIKPFSAKIETDLDESAQPTILKVECGICNQPFENYIQMTLHFIETHKDKNNLCPTCNTVFPMITDFREHILNVHPLICSFCSRKFHSQFNLTTHLKRHLQIKPYVCEQCHKCFVSRIKLQDHMNGHLNIKPYSCSMCDQAFSCKSNLNSHIRKLHQANATPKDFYCHCGEVFHSLKKLAWHKEIHEDKPKQCPWCSERFVHVTSLTRHIRRSHDSSYLPTKDRDFENMTCDICNNTFLRKSFATHMLIHKDLRPYSCNICNRSFRTKWNLRMHQWTHMSRTHKPFKCTQCKSAFYLKHEWEAHVRAHNGVRPFTCNECGKQFIRKKHCMRHMAEHEEGNRAYECKECGKRFHRSYYLSDHIKTHTGQKPHTCHICGKTTSSKSNHNKHVRTHHARESINTEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01305876;
- 90% Identity
- iTF_01305048;
- 80% Identity
- -