Basic Information

Insect: Aulacorthum solani
Gene Symbol: -
Assembly: GCA_008528875.1
Location: PVMI01043385.1:851-3707[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3.2 6.3e+02 2.2 1.2 3 23 6 26 4 26 0.93

2 14 0.0026 0.51 11.9 1.3 1 23 357 380 357 380 0.95

3 14 0.03 5.8 8.6 0.1 2 21 416 435 415 438 0.88

4 14 0.089 17 7.1 0.1 3 23 445 466 444 466 0.96

5 14 0.0017 0.34 12.5 5.8 2 23 469 490 468 490 0.96

6 14 3.4e-05 0.0067 17.8 6.1 1 23 496 518 496 518 0.97

7 14 2.7e-05 0.0054 18.1 2.3 1 23 524 547 524 547 0.97

8 14 0.15 29 6.4 2.9 5 23 559 577 556 577 0.96

9 14 0.0012 0.23 13.0 3.3 2 21 583 602 582 605 0.95

10 14 0.14 28 6.4 2.3 2 23 621 641 620 641 0.96

11 14 2.4e-06 0.00047 21.4 1.4 1 22 647 668 647 669 0.92

12 14 0.0098 1.9 10.1 1.4 1 23 677 699 677 699 0.98

13 14 0.00026 0.052 15.0 5.4 1 23 705 727 705 727 0.97

14 14 1.9 3.8e+02 2.9 2.1 1 8 734 741 734 742 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3.2	6.3e+02	2.2	1.2	3	23	6	26	4	26	0.93
2	14	0.0026	0.51	11.9	1.3	1	23	357	380	357	380	0.95
3	14	0.03	5.8	8.6	0.1	2	21	416	435	415	438	0.88
4	14	0.089	17	7.1	0.1	3	23	445	466	444	466	0.96
5	14	0.0017	0.34	12.5	5.8	2	23	469	490	468	490	0.96
6	14	3.4e-05	0.0067	17.8	6.1	1	23	496	518	496	518	0.97
7	14	2.7e-05	0.0054	18.1	2.3	1	23	524	547	524	547	0.97
8	14	0.15	29	6.4	2.9	5	23	559	577	556	577	0.96
9	14	0.0012	0.23	13.0	3.3	2	21	583	602	582	605	0.95
10	14	0.14	28	6.4	2.3	2	23	621	641	620	641	0.96
11	14	2.4e-06	0.00047	21.4	1.4	1	22	647	668	647	669	0.92
12	14	0.0098	1.9	10.1	1.4	1	23	677	699	677	699	0.98
13	14	0.00026	0.052	15.0	5.4	1	23	705	727	705	727	0.97
14	14	1.9	3.8e+02	2.9	2.1	1	8	734	741	734	742	0.91

Sequence Information

Coding Sequence: atgaatcaatCATGTTGTCCGGTTTGCACATTGTACTTACGCCCAGGAATATCACTAACTGTCCATTTGCATACACATCCCAAAAAACAAGTCATAAAAGCTTTGTTGACCCTAACCAATCAAGCATCTCCTTCCAAATCAGACCAAGAAAACCTTTCAGATGACAGTAGCTCCTCTTCAGATTCATCAGACTCGGGTgaatacacttttattttaccagATAGAGTTAATAATacgaacaaaaataacataaatatatcagAGCCGGTTAACGAAGCCGGCAGAAATACCTTCAATATATCTGAGGCTGTTAATTCTGGGCTTAATAATGCAGACAGAAATAGCCCTAGCAACTGTCCCTCACCTAAAAGCCAAAACAGTCAAGCACTTTCTGAACTACGAGATGCTCTTGAGGATAATCCCGAGGATGACAACATTGATATTGAAGATAACAATGTTACTTTTGAGGATGATTATCCACCAGAATTTGAAGAAGACCAACAAGATTGTAGTATTGGTTTTCAAGGAGAATCAAATGAATCAACTCAACATCATGAAGTGTCGGAAGAAACAGGCTCGTCTGTGGCAGGTCACTTTAACGATCCATTTCAATCAAATGGTAATCTACTTGAAAATGAAGAATATATGTCGCACTATTTTTACTCAAGTGAAAATGCTCGTATATCACATACTGATCCAGATCCTCAACTTAACCCTCCTCAGTATAGTACTCTTACTACAATGGAACTACACACAGAATATTTATCCTCAAACCATCAAGAACATAATTTAACTCTAGATATTCAAACTGATGAACTTATGCCAGCTCATGGAGAATTATCTGGCCAAGAGAGTTTAGAACCCCCTGAACCAATCCTTGCATCTATATGGACAATGAAAAGTAGCGATAATATCCTGCCTCATACGAGTACTGCATGGGATGATACTGTACACGAAGTTAGTACTGCTGCTAGAaatttaatgtgtttaaaaaacagaGAAGAAATCCCTAAAGAAGATACTAaagaaataatagaaaaaaaagaagtgaAACCACTTATAGGAAAATTTGTTTGTCCTTATTGCAAATTTAAGTTCAATGATGTTAAATCACGTAAAACACATATCAATGAAGAACACAGAAATGAAGAAGGTGTGAAGAAAGgtttaatgtacataaaacCATTATCGACCAAAATAGAGACTGATTTGGAAGAATCAGCTCAACCAACTACTCTAAAAGTGGAATGTGGCATTTGTGATCAACCTTTcgaaaattatacacaaatgACATTGCATTTTATTGATACTCATAAAGataagaataatttatgtcCAACATGTAAAGTAGTATTTCCTATGATAACAGAATTTCGTGAACATATTCTAAATGTTCATCCATTGTCATGTAGTTTCTGTTCAAGGAAATTTCAttctcaatttaatttaaccacTCATTTGAAACGTCACCTTCAAATTAAGCCACATGTATGTGATCAATGTCATAAATGTTTTGCCAGTCGTGCTAAACTTCAAGATCACATGAATAGTCATCTCAATATAAAACCATACATTTGTTCTATGTGTGATCAAGCTTTTAGTtgcaaatcaaatttaaatagtcaTATTCGTAAACTACATCTGAGTAATGGAACTCCAAAAGATTTTTATTGCCATTGTGGAGAGgtatttcaCTCATTAAAAAAGCTTGCATGGCACAAGGAAACTCATGAAGATAAACCAAAACAATGCCCTTGGTGTTCAGAACGTTTTATACACTTGACATCTTTGACTAGGCATATACGGTGTTCACATGATTCCTCTTATTTACCTACTAAAGATCGTGATGTTGAAAACATGAGCTGtcatgtatgtaataatacatttttgcgTAAATCTTTTGCTACCCATATGCTTATTCACAAAGATTTAAGACCTTATTCTTGCAATATATGCAACCGATCATTTCGAACTAAATGGAATTTAAGAATGCATCAGTGGACTCATATGTCAAGAACGCACAAACCTTTTAAATGTACCCAGTGCAAAAGTGCATTTTATCTTAAACATGAATGGGAAGCTCATGTACGTGCGCACAATGGTATTCGTCCATTTACATGCAATGAATGtggaaaacaatttatcagGAAAAAACATTGTATGAGACATATGGCAGAACACGAGGAAGGCAATCGTTCATATGAATGCAAGGAATGTGGCAAAAAgtga
Protein Sequence: MNQSCCPVCTLYLRPGISLTVHLHTHPKKQVIKALLTLTNQASPSKSDQENLSDDSSSSSDSSDSGEYTFILPDRVNNTNKNNINISEPVNEAGRNTFNISEAVNSGLNNADRNSPSNCPSPKSQNSQALSELRDALEDNPEDDNIDIEDNNVTFEDDYPPEFEEDQQDCSIGFQGESNESTQHHEVSEETGSSVAGHFNDPFQSNGNLLENEEYMSHYFYSSENARISHTDPDPQLNPPQYSTLTTMELHTEYLSSNHQEHNLTLDIQTDELMPAHGELSGQESLEPPEPILASIWTMKSSDNILPHTSTAWDDTVHEVSTAARNLMCLKNREEIPKEDTKEIIEKKEVKPLIGKFVCPYCKFKFNDVKSRKTHINEEHRNEEGVKKGLMYIKPLSTKIETDLEESAQPTTLKVECGICDQPFENYTQMTLHFIDTHKDKNNLCPTCKVVFPMITEFREHILNVHPLSCSFCSRKFHSQFNLTTHLKRHLQIKPHVCDQCHKCFASRAKLQDHMNSHLNIKPYICSMCDQAFSCKSNLNSHIRKLHLSNGTPKDFYCHCGEVFHSLKKLAWHKETHEDKPKQCPWCSERFIHLTSLTRHIRCSHDSSYLPTKDRDVENMSCHVCNNTFLRKSFATHMLIHKDLRPYSCNICNRSFRTKWNLRMHQWTHMSRTHKPFKCTQCKSAFYLKHEWEAHVRAHNGIRPFTCNECGKQFIRKKHCMRHMAEHEEGNRSYECKECGKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01305876;
90% Identity: iTF_01305048;
80% Identity: -