Dnox000272.1
Basic Information
- Insect
- Diuraphis noxia
- Gene Symbol
- -
- Assembly
- GCA_001186385.1
- Location
- NW:758116-766387[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.3 2.3e+02 2.1 1.2 3 23 6 26 4 26 0.93 2 15 0.0058 0.4 10.7 0.3 2 23 353 375 352 375 0.94 3 15 0.03 2.1 8.5 0.1 2 21 411 430 410 433 0.88 4 15 0.035 2.4 8.3 0.0 3 23 440 461 439 461 0.96 5 15 0.0018 0.13 12.3 5.9 2 23 464 485 463 485 0.96 6 15 1.1e-05 0.00077 19.3 3.4 1 23 491 513 491 513 0.98 7 15 3.6e-05 0.0025 17.7 2.6 1 23 519 542 519 542 0.97 8 15 0.95 65 3.8 0.9 5 23 554 572 552 572 0.96 9 15 1.9e-05 0.0013 18.6 2.0 2 23 578 600 577 600 0.97 10 15 0.083 5.7 7.1 2.3 2 23 616 636 615 636 0.96 11 15 2.4e-06 0.00017 21.3 1.4 1 22 642 663 642 664 0.92 12 15 0.01 0.69 10.0 1.4 1 23 672 694 672 694 0.98 13 15 0.00027 0.019 14.9 5.4 1 23 700 722 700 722 0.97 14 15 1.2e-06 8.4e-05 22.3 4.5 1 23 729 751 729 751 0.99 15 15 0.00084 0.058 13.4 10.2 1 23 757 779 757 780 0.95
Sequence Information
- Coding Sequence
- ATGAATCAATCATGTTGTCCAGTTTGCACATTGTACTTACGCCCAGGAATATCTTTAACTGTCCATTTGCATACGCATCCCAAAAAACAAGTCATAAAAGCTTTGTTGAACCTTACAAATCAAGCATCTCCTTCCAAATCAGACCAAGAAAACCTTTCAGATGACAGTAGCTCGTCTTCAGGTACTTCAGATGCAGGTGGATACTCTTTTGCTATACCAGATAGAGTTAACAATACGAACAAAAATACCTTAAATATATCAGAGTCGATTAATGAAACCGGCAGAACTAACTTCAATATATCTGAAGCTGTTAATTCTGGGCTTAATAATGCGGACAGAAATAGTCCTCCTTCTCCAAAAAGCCAAAACAGTCAAGCACTTTCTGAACTACGAGATGCTCTTGAAGATAATCCTGAGGATGACATTGATATTGAAGATAGCAATGTTACTTTTGAGGATGACTATCCGCCAGAATTTGAAGACCAACAAGATCGCAGTATTGGTTTTCAAGGAGAATCAAATGAATCAACTCAACATCATGAAGTGTCGGAAGAAACAGGCTCGTCTGCAGCAGGTCACTTTAATGATCCATTTCAATCAAATGCTAATCTACTTGAAAATGAAGAATATATGTCTCATTATTTTTACTCAAGTGAAAATGCTCGTATATCACATACTGATCCAGATCCTCAACTTAACCCTCCTCAGTATAGTACTCTTACTACAATGGAATTACACCCagaatatttatcatcaaaCCATCAAGAACATAATCTAACTCTAGATATTCAAACAGATGAACTTATGCCAGCTCATGGAGAATTATCTGGCCAAGAGAGTTTAGAACCCCCTGAACCAATACTTGCATCCATATGGACAATGAAAAGTAGTGATGATATTCTGCCACATACTAGCACTGCATGGGATGATACTGTACACGAAGTTAGTACTGCTGCTAGaaatttaatgtgtttaaaaaacagAGAAGAAATTCCTAAAGAAGATACTAAAGAAATAATAGAGAAAAAAGAAGTGAAACCACTTATAGGAAAATTAATTTGCCCATATTGCAAATTAAAGTTCAATGATGTTAAATCACGTAAAGCACATATCAATGAAGAACATAGAAATGAAGAAGGCGTGAAAAAAGGTTTAATGTACATAAAACCATTTTCGACCAAAATAGAGACAGATTTGGAAGAATTGGCTCAACCAACTACTCTAAAAGTGGAATGTGGCATTTGTGATCAACCTTTCGAAAATTATACACAAATGACATTGCATTTTATAGATACTCATAAAGATAAGAATAATTTGTGTCCAACATGTAACATAGTATTTCCTATGATAACAGAATTTCGAGAACATATACTAAATGTTCATCCATTGTCATGTAGTTTCTGTACAAGAAAATTCCATTCCCAATTTAATTTAACCACTCATTTGAAACGTCACCTTCAAATTAAGCCATACGTCTGTGAACAATGTCACAAATGTTTTGCTAGTCGTGTCAAACTTCAAGATCACATGAATGGTCATctaaatataaaaccatatatttGTTCTATGTGTGATCAAGCTTTTAGTtgcaaatcaaatttaaatagtcATATTCGTAAACAACATCAAAGTAATGGAACACCAAAAGATTTTTATTGCCATTGTGGAGAGGTATTTCTTTCATTAAAAAAGCTTGCATGGCATAAAGAAACTCATGAAGATAAACCAAAACAATGTCCATGGTGTTCAGAACGTTTTGTACACTTAACATCTTTGACTAGGCATATACGGCGTTCACACGATTCCTCTTATTTACCTACTAAAGATCGTGACGTTGAAAACATGAGCTGtcatatatgtaataatacatttttacgtaaATCTTTTGCTACCCATATGCTTATTCACAAAGATTTAAGACCTTATTCTTGCAATATATGCAACCGATCATTTCGAACTAAATGGAATTTAAGAATGCATCAGTGGACTCATATGTCACGTACGCACAAACCTTTTAAATGTACCCAGTGTAAAAGTGCATTTTATCTCAAACATGAATGGGAAGCTCATGTACGTGCACATAACGGTGTTCGTCCATTTACATGCAATGAATGCGGAAAACAATTTATCAGGAAAAAACATTGTATGAGACATATGGCAGAACACGAGGAAGGCAATCGTTCATATGAATGCAAAGAATGTGGCAAAAAGTTCCACCGTAGTTATTATCTAACAGATCACTTAAAGACACATACTGGACAAAAACCTCATACATGTCATATATGCGGAAAAACAACTAGTTCTAAATCAAATCACAACAAACATGTCCGTACACACCATGCAAGAGAATCAATAAACACCGAAGGTTGA
- Protein Sequence
- MNQSCCPVCTLYLRPGISLTVHLHTHPKKQVIKALLNLTNQASPSKSDQENLSDDSSSSSGTSDAGGYSFAIPDRVNNTNKNTLNISESINETGRTNFNISEAVNSGLNNADRNSPPSPKSQNSQALSELRDALEDNPEDDIDIEDSNVTFEDDYPPEFEDQQDRSIGFQGESNESTQHHEVSEETGSSAAGHFNDPFQSNANLLENEEYMSHYFYSSENARISHTDPDPQLNPPQYSTLTTMELHPEYLSSNHQEHNLTLDIQTDELMPAHGELSGQESLEPPEPILASIWTMKSSDDILPHTSTAWDDTVHEVSTAARNLMCLKNREEIPKEDTKEIIEKKEVKPLIGKLICPYCKLKFNDVKSRKAHINEEHRNEEGVKKGLMYIKPFSTKIETDLEELAQPTTLKVECGICDQPFENYTQMTLHFIDTHKDKNNLCPTCNIVFPMITEFREHILNVHPLSCSFCTRKFHSQFNLTTHLKRHLQIKPYVCEQCHKCFASRVKLQDHMNGHLNIKPYICSMCDQAFSCKSNLNSHIRKQHQSNGTPKDFYCHCGEVFLSLKKLAWHKETHEDKPKQCPWCSERFVHLTSLTRHIRRSHDSSYLPTKDRDVENMSCHICNNTFLRKSFATHMLIHKDLRPYSCNICNRSFRTKWNLRMHQWTHMSRTHKPFKCTQCKSAFYLKHEWEAHVRAHNGVRPFTCNECGKQFIRKKHCMRHMAEHEEGNRSYECKECGKKFHRSYYLTDHLKTHTGQKPHTCHICGKTTSSKSNHNKHVRTHHARESINTEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01305876;
- 90% Identity
- iTF_01305048;
- 80% Identity
- -