Meup032889.1
Basic Information
- Insect
- Macrosiphum euphorbiae
- Gene Symbol
- -
- Assembly
- GCA_949089665.1
- Location
- CARXXK010000003.1:53034012-53037796[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.008 1 11.8 0.2 2 23 361 383 360 383 0.94 2 14 0.093 12 8.5 0.1 2 21 419 438 418 441 0.88 3 14 0.087 11 8.5 0.1 3 23 448 469 447 469 0.96 4 14 0.00067 0.087 15.2 3.7 2 23 472 493 471 493 0.96 5 14 6.6e-06 0.00086 21.5 0.4 1 23 499 521 499 521 0.97 6 14 7.7e-05 0.01 18.1 3.4 1 23 527 550 527 550 0.98 7 14 0.47 61 6.2 2.9 5 23 562 580 559 580 0.96 8 14 2.5e-05 0.0032 19.7 2.3 2 23 586 608 585 608 0.97 9 14 1.3 1.7e+02 4.8 2.5 2 23 624 644 623 644 0.96 10 14 7.5e-06 0.00098 21.3 1.4 1 22 650 671 650 672 0.92 11 14 0.031 4 10.0 1.4 1 23 680 702 680 702 0.98 12 14 0.00083 0.11 14.9 5.4 1 23 708 730 708 730 0.97 13 14 3.8e-06 0.00049 22.3 4.5 1 23 737 759 737 759 0.99 14 14 0.0026 0.34 13.3 10.2 1 23 765 787 765 788 0.95
Sequence Information
- Coding Sequence
- atgaatcaaTCATGTTGTCCAGTTTGCACATTGTACTTACGTCCAGGAATATCTCTAACTGTCCATTTACATACACATCCCAAAAAACAAGTCATAAAAGCTTTGTTAAACCTAACCAATCAAGCATCCCCTTCCAAATCAGACCAAGAAAACCTTTCAGATGACAGTAGCTCATCTTCAGATTCATCAGCCGCAAATGCATACTCTTTTATTATACCAGATAGAGTTAATAATGCGaacaaaaataccataaaaatacCAGAGCCGGCTGATGAAGATGACAGAACTAACTTCAACATATCTGAGACTGATAATCCTGAGCTTTTTGAATTAAGACGTATTTATGAAGCGGAGAGAAATAGCCGTAATAACTGTCCATCACCTGAAAGCCAAAACAGTCAAGCACTTTCTGAACTACGAGATGCTCTTGAGGATAATCCCGAggatgatattgatattgaagATAATAATGTTACTTTTGAGGATGATGACTATCCATCAGAATTTGAACGCCAACGAGGTTGCTGTATTGGTTTGGAATCAAATGAAACAACTCAACATCATGAAGTGTCGGAAGAAACAGGCTCGTCTGTGGCAGGTCACTCGAATGATCCATTTCAATCAAATGGTAATCTACTTGAAAATGAAGAATATATGTCGACCTATTTTTACTCAAGTGAAAATGCTCGCATATCACATACTGATCCAGATCCTCAACTTAACCCTCCTCAGTACAGTACTCTTACTACAATGGAACTACACCCTGAATATTTATCCTCAAACCATCAAGAACATAATTTAACTCTAGATATTCAAACAGATGAACTTATGCCAGCTCATGGAGAACTATCTGGCCAAGAAAGTTTAGAACCCCCTGAACCAATACTTGCATCCATATGGACAATGAAAAGTAGTGATGATATTCTGCCTCATACTAGTACTGCATGGGATGATACTGTACACGAAGTGAGTACTGCTGCTAGAAatttaatgtgtttaaaaaacaGAGAAGAAATCCCTAAAGAAGATACTAAAGAAATAATAGAGAAAAAAGAAGTAAAACCACTTATAGGAAAATTAATTTGTCCATATTGCAAATTAAAGTTCAGTGATGTTAAATCACGTAAAGCACATATCAATGAAGAACATAGAAATGAAGAAGGCGTGAAGAAAGGTTTGATGTACATAAAACCATTTTCGACCAAAATTGAGACTGATCTGGAAGAATCAGTTCAACCAACTACTTTGAAAGTGGAATGTGGCATTTGTGATCaaccttttgaaaattatacacaaatgacattacattttattgatactcataaagATAAGAATAATTTATGTCCAACATGTAACATGGTGTTTCCTTTGATAACAGATTTTCGAGaacatatacaaaatattcatcCATTGCCTTGTAGTTTCTGTCCAAGGAAATTCCATTCCCAATTTAATTTAACCACTCATTTGAAACGTCACCTTCAAATTAAGCCATTCGTTTGTGAACAATGTAATAAATCTTTTGCCAGTCGTGTTAAACTTCAAGATCACATGAATGGTCATCTCAATATAAAACCATACACTTGTTCTATGTGTGATCAAGCTTTTAGTtgcaaatcaaatttaaatagtcATATTCGTAAACAACATCAGAGTAATGGAACACCAAAAGATTTTTATTGCCATTGTGGAGAGgTATTTCACTCGTTAAAAAAGCTTGCATGGCACAAGGAAACTCATGAGGATAAACCAAAACAATGCCCATGGTGTTCAGAACGTTTTGTTCACTCAACATCTTTGACTAGGCATATACGACGTTCACATGATTCCTCTTATTTACCTACAAAAGATCGTGATATTGAAAACATGAGCTGTCATTTATGTAATAGTACATTTTTGCGTAAATCTTTTGCTACCCATATGCTCATTCACAAAGATTTAAGACCCTATTCTTGTAATATATGCAACCGATCATTTCGAACTAAATGGAATTTAAGAATGCATCAGTGGACTCATATGTCACGCACGCACAAACCTTTTAAATGTACCCAGTGCAAAAGTGCATTTTATCTCAAACATGAATGGGAAGCTCATGTACGTGCACACAATGGTGTTCGTCCATTTACATGCAATGAATGTGGAAAACAATTCATcagaaaaaaacattgtatgaGACATATGGCAGAACACGAGGAAGGTAATCGTTCATATGAATGCAAGGAATGTGGCAAAAAGTTTCATCGTAGTTATTATCTGACAGATCACTTAAAGACGCACACTGGACAAAAGCCTCATACATGTCATATATGCGGCAAAACAACAAGTTCTAAGTCAAATCACAACAAACATGTCCGTACACACCATGCGAGAGAATCAATAAACACTGAAAATTGA
- Protein Sequence
- MNQSCCPVCTLYLRPGISLTVHLHTHPKKQVIKALLNLTNQASPSKSDQENLSDDSSSSSDSSAANAYSFIIPDRVNNANKNTIKIPEPADEDDRTNFNISETDNPELFELRRIYEAERNSRNNCPSPESQNSQALSELRDALEDNPEDDIDIEDNNVTFEDDDYPSEFERQRGCCIGLESNETTQHHEVSEETGSSVAGHSNDPFQSNGNLLENEEYMSTYFYSSENARISHTDPDPQLNPPQYSTLTTMELHPEYLSSNHQEHNLTLDIQTDELMPAHGELSGQESLEPPEPILASIWTMKSSDDILPHTSTAWDDTVHEVSTAARNLMCLKNREEIPKEDTKEIIEKKEVKPLIGKLICPYCKLKFSDVKSRKAHINEEHRNEEGVKKGLMYIKPFSTKIETDLEESVQPTTLKVECGICDQPFENYTQMTLHFIDTHKDKNNLCPTCNMVFPLITDFREHIQNIHPLPCSFCPRKFHSQFNLTTHLKRHLQIKPFVCEQCNKSFASRVKLQDHMNGHLNIKPYTCSMCDQAFSCKSNLNSHIRKQHQSNGTPKDFYCHCGEVFHSLKKLAWHKETHEDKPKQCPWCSERFVHSTSLTRHIRRSHDSSYLPTKDRDIENMSCHLCNSTFLRKSFATHMLIHKDLRPYSCNICNRSFRTKWNLRMHQWTHMSRTHKPFKCTQCKSAFYLKHEWEAHVRAHNGVRPFTCNECGKQFIRKKHCMRHMAEHEEGNRSYECKECGKKFHRSYYLTDHLKTHTGQKPHTCHICGKTTSSKSNHNKHVRTHHARESINTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01305876;
- 90% Identity
- iTF_00019606;
- 80% Identity
- -