Apis005265.1
Basic Information
- Insect
- Acyrthosiphon pisum
- Gene Symbol
- -
- Assembly
- GCA_005508785.1
- Location
- NC:34938023-34945556[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.5 77 4.0 0.4 3 23 6 26 4 26 0.93 2 15 0.005 0.25 11.8 0.2 2 23 365 387 364 387 0.94 3 15 0.058 2.9 8.4 0.1 2 21 423 442 422 445 0.88 4 15 0.074 3.7 8.1 0.1 3 23 452 473 451 473 0.96 5 15 0.00042 0.021 15.2 3.7 2 23 476 497 475 497 0.96 6 15 4.1e-06 0.0002 21.5 0.4 1 23 503 525 503 525 0.97 7 15 4.8e-05 0.0024 18.1 3.4 1 23 531 554 531 554 0.98 8 15 0.29 15 6.2 2.9 5 23 566 584 563 584 0.96 9 15 1.5e-05 0.00077 19.7 2.3 2 23 590 612 589 612 0.97 10 15 0.6 30 5.3 2.7 2 23 628 648 627 648 0.96 11 15 4.7e-06 0.00023 21.3 1.4 1 22 654 675 654 676 0.92 12 15 0.019 0.96 10.0 1.4 1 23 684 706 684 706 0.98 13 15 0.00052 0.026 14.9 5.4 1 23 712 734 712 734 0.97 14 15 2.3e-06 0.00012 22.3 4.5 1 23 741 763 741 763 0.99 15 15 0.0016 0.081 13.3 10.2 1 23 769 791 769 792 0.95
Sequence Information
- Coding Sequence
- atgaatcaaTCATGTTGTCCAGTTTGCACATTGTACTTACGCCCAGGAATATCTCTAACTGTCCATTTACAAACGCATCCCAAAAAACAAGTGATAAAAGCTTTGTTAACCCTAACCAATCAAGCATCCCCTTCCAAATCAGACCAAGAAAACCTTTCAGATGACAGTAGTTCTTCTTCAGATTCATCAACCCCAGCTGCATACTCTTTTATTATACAAGATAGACATAATaatgcgaaaaaaaaaaaaaccataaaaataccAGAGCCGGTTAATGAATCCAACGAACCTGATTTGGAGATACTTGAGCCTGTTAATAATTCTGggtattttgaattaagtagTATTTATGAAGAGGACAGAAATAACCCTAATAATTGTCCATCACCTGAAAGCCAAAACAGTCAAGCACTTTCTGAACTACGAGATGCTCTTGAGGATAATCCCGAGGATGACATTGATATTGAAGATAACAATGTTACTTTTGAGGATGACTATCCACCAGAATTTGAACAAGGCCAACGAGGTCGCTGTATTGGTTTTCAAGACGAATCAAATGAATCAACTCAACATCATGAGGTGTCGGAAGAAACAGGCTCGTCTGTGGCAGGTCACTTTAATGATCCATTTCAATCAAATGGTAATCTACTTGAAAATGAAGAATATATATCGCACTGTTTTTACTCAAGTGAAAATGCTCGCATATCACATACTGATCCAGATCCTCAACTTAACCCTCCTCAGTATAGTACTCTTACTACAATGGAACTACACCCAGAATATTTATCCTCAAACCATCAAGAACATCATTTAACTCTAGATATCCAAACAGATGAACTTATGCCAGCTCATGGAGAATTATCTGGCCAAGAAAGTTTAGAGCCCCCTGAACCAATACTTGCATCCATATGGACAATGAAAAGTAGTGATGATATTCTGCCTCATACTAGTACTGCATGGGATGATACTGTACACGAAGTGAGTACTGCTGCTAGAaatttaatgtgtttaaaaaacaGAGAAGAAATCCCTAAAGAAGATACTAAAGAAATAATAGAGAAAAAAGAAGTAAAACCACTTATTGGAAAATTAATTTGTCCATATTGCAAATTAAAGTTCAGCGATGTCAAATCACGTAAAGCACATATCAATGAAGAACATAGAAATGAAGAAGGTGTGAAAAAAGGTTTGATGTACATTAAACCATTTTCAACCAAAATAGAGACTGATTTGGAAGAATCAGGTCAACCAACTACTTTGAAAGTGGAATGTGGCATTTGTGATCAACCTTTCGAAAATTATACACAAATGACATTGCATTTTATTGATACTCATAAAGaTAAGAATAATTTATGTCCAACATGTAACATAGTGTTTCCTTTGATAACGGAATTTCGAGaacatatacaaaatattcatcCATTGCCATGTAGTTTCTGTCCAAGAAAATTCCATTcccaatttaatttaactactcATTTGAAACGTCACCTTCAAATTAAGCCATTCGTTTGTGAACAATGTAATAAATCTTTTGCCAGTCGTGTTAAACTTCAAGATCACATGAATGGTCATCTCAATATAAAACCATACACTTGTTCTATGTGTGATCAAGCTTTTAGTTGCAAATCAAACTTAAATAGTCATATTCGTAAACAACATCAGAGTAATGGAACTCCAAAAGATTTTTATTGCCATTGTGGAGAGgtatttcaCTCATTAAAAAAGCTTGCATGGCACAAGGAAACTCATGAGGATAAACCAAAACAATGCCCATGGTGTTCAGAACGTTTTGTTCACTCAACATCTTTGACTAGGCATATACGACGTTCACATGATTCCTCTTATTTACCTACAAAAGATCGTGATATTGAAAACATGAGCTgtcatttatgtaataatacatttttgcgtAAATCTTTTGCTACCCATATGCTCATTCACAAAGATTTAAGACCTTATTCTTGTAATATATGCAACCGATCATTTCGAACTAAATGGAATTTAAGAATGCATCAGTGGACTCATATGTCACGCACACACAAACCTTTTAAATGTACCCAGTGCAAAAGTGCATTTTATCTCAAACATGAATGGGAAGCTCATGTACGTGCACACAATGGTGTTCGTCCATTTACATGCAATGAATGTGGAAAACAATTCATCAGGAAAAAACATTGTATGAGACATATGGCAGAACACGAGGAAGGTAATCGTTCATATGAATGCAAGGAATGTGGCAAAAAGTTCCATCGTAGTTATTATCTGACAGATCACTTAAAGACACACACTGGACAAAAGCCTCATACATGTCATATATGCGGCAAAACAACAAGTTCTAAGTCTAATCACAACAAACATGTCCGTACACACCATGCGAGAGAATCAATAAACACTGAAGGTTGA
- Protein Sequence
- MNQSCCPVCTLYLRPGISLTVHLQTHPKKQVIKALLTLTNQASPSKSDQENLSDDSSSSSDSSTPAAYSFIIQDRHNNAKKKKTIKIPEPVNESNEPDLEILEPVNNSGYFELSSIYEEDRNNPNNCPSPESQNSQALSELRDALEDNPEDDIDIEDNNVTFEDDYPPEFEQGQRGRCIGFQDESNESTQHHEVSEETGSSVAGHFNDPFQSNGNLLENEEYISHCFYSSENARISHTDPDPQLNPPQYSTLTTMELHPEYLSSNHQEHHLTLDIQTDELMPAHGELSGQESLEPPEPILASIWTMKSSDDILPHTSTAWDDTVHEVSTAARNLMCLKNREEIPKEDTKEIIEKKEVKPLIGKLICPYCKLKFSDVKSRKAHINEEHRNEEGVKKGLMYIKPFSTKIETDLEESGQPTTLKVECGICDQPFENYTQMTLHFIDTHKDKNNLCPTCNIVFPLITEFREHIQNIHPLPCSFCPRKFHSQFNLTTHLKRHLQIKPFVCEQCNKSFASRVKLQDHMNGHLNIKPYTCSMCDQAFSCKSNLNSHIRKQHQSNGTPKDFYCHCGEVFHSLKKLAWHKETHEDKPKQCPWCSERFVHSTSLTRHIRRSHDSSYLPTKDRDIENMSCHLCNNTFLRKSFATHMLIHKDLRPYSCNICNRSFRTKWNLRMHQWTHMSRTHKPFKCTQCKSAFYLKHEWEAHVRAHNGVRPFTCNECGKQFIRKKHCMRHMAEHEEGNRSYECKECGKKFHRSYYLTDHLKTHTGQKPHTCHICGKTTSSKSNHNKHVRTHHARESINTEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01305876;
- 90% Identity
- iTF_01350309; iTF_01038677; iTF_01167914; iTF_00942105;
- 80% Identity
- -