Nrib013658.1
Basic Information
- Insect
- Nasonovia ribisnigri
- Gene Symbol
- -
- Assembly
- GCA_027563275.1
- Location
- JANEHQ010000222.1:221505-225495[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 5.1 6.1e+02 2.1 1.2 3 23 6 26 4 26 0.93 2 15 0.0046 0.54 11.7 0.3 2 23 357 379 356 379 0.94 3 15 0.13 15 7.1 0.1 2 21 415 434 414 437 0.87 4 15 0.06 7.1 8.1 0.1 3 23 444 465 443 465 0.96 5 15 0.00034 0.04 15.2 3.7 2 23 468 489 467 489 0.96 6 15 3.2e-06 0.00038 21.6 0.4 1 23 495 517 495 517 0.97 7 15 3.9e-05 0.0047 18.2 3.4 1 23 523 546 523 546 0.98 8 15 0.24 28 6.2 2.9 5 23 558 576 555 576 0.96 9 15 2.9e-05 0.0035 18.6 2.0 2 23 582 604 581 604 0.97 10 15 0.49 58 5.3 2.7 2 23 620 640 619 640 0.96 11 15 3.8e-06 0.00045 21.3 1.4 1 22 646 667 646 668 0.92 12 15 0.016 1.9 10.0 1.4 1 23 676 698 676 698 0.98 13 15 0.00042 0.05 14.9 5.4 1 23 704 726 704 726 0.97 14 15 1.9e-06 0.00023 22.3 4.5 1 23 733 755 733 755 0.99 15 15 0.0018 0.22 12.9 9.3 1 23 761 783 761 784 0.95
Sequence Information
- Coding Sequence
- ATGAATCAATCATGTTGTCCAGTTTGCACATTGTACTTACGCCCAGGAATATCTCTAACTGTCCATTTGCATACGCATCCCAAAAAACAAGTCATAAAAGCTTTGTTATCCCTAACCAATCAATCATCACCTTCCAAATCAGACCAAGAAAACCTGTCAGATGACAGTAGCTCATCTTCAAATTCATCAGACGCAGGTGGATACTCTTTTATCATACCAGATAGAGTTAATAATGTGAACAAAAATTCCTTAAATATATCAGAGTCGGTTAATGAAGCCGGCAGAACTAACTTCAATATATCTGAGGCTGTTAATTCTGGGCCTAATAATGTTGACAGAAATAGCCCTAATAACTGTCCATCACCTAAAAGCCAAAACAGTCAAGCACTTTCTGAACTACGAGATGCTCTCGAGGATAGTCCCGAGGATGACATTGATATTGAAGATAACAATGTTACTTTTGAGGATGACTATCCACCGGAATTTGAAGAAGACCAACAAGATTGCAGTATTGGTTTTCAAGGAGAATCAAATGAATCAACTCAACATCATGAAGTTTCGGAAGAAACAGGCTCGTCTGTGGTAGGTCACTTTAATGATCCATTTCAATCAAATGGTAATCTCCTTGAAAATGAAGAATATATGTCGCACTATTTTTACTCAAGTGAAAATGCTCGTATATCTCATACTGATCCAGATCCTCAACTTAACCCTCCTCAGTATAGTACTCTTACTACAATGGAACTACACCCAGAATATTTATCATCAAACCATCAAGAACATAATTTAACTCTAGATATTCAAACAGATGAACTTATGCCAGCTCATGGAGAATTATCTGGCCAAGAGAGTTTAGAACCCCCTGAACCAATACTTGCATCCATATGGACAATGAAAAGTAGTGATGATATTCTGCCTCATACTAGTACTGCATGGGATGATACTGTACACGAAGTGAGTACTGCTGCTAGAAATTTAATGTGTTTAAAAAACAGAGAAGAAATCCCTAAAGAAGATACTAAAGAAATAATAGAGAAAAAAGAAGTGAAACCACTTATAGGAAAATTAATTTGTCCATATTGCAAATTAAAGTTCACGGATATTAAATCACGAAAAGCACATATCAATGAAGAACATAGAAATGAAGAAGGTGTGAAGAAAGGTTTGATGTACATAAAACCATTTTCGACCAAAATAGAGACTGATTTGGAAGAATCAGCTCAACCAACTACTTTGAAAGTGGAATGTGGCATTTGTGATCAACCTTTCGAAAATTATATACAAATGACATTGCATTTTATTGATACTCATAAAGATAAGAATAATTTATGTCCAACATGTAACATAGTATTTCCTTTAATAACAGAATTTCGAGAACATATTCAAAATGTTCATCCATTGCCATGTAGTTTCTGTCCAAGGAAATTTCATTCCCAATTTAATTTAACCACTCATTTGAAACGTCACCTTCAAATTAAGCCATTCGTGTGTGAACAATGTAATAAATCTTTTGCCAGTCGTGTTAAACTTCAAGAGCACATGAATGGTCACCTCAAAATCAAACCATACACTTGTTCTATGTGTGATCAAGCTTTTAGTTGCAAATCAAATTTAAATAGTCATATTCGTAAACAACATCAGAGTAATGGAACTCCAAAAGATTTTTATTGCCATTGTGGAGAGGTATTTCACTCGTTAAAAAAGCTTGCATGGCACAAGGAAACTCACGAAGATAAACCAAAACAATGCCCATGGTGTTCAGAACGTTTTGTACACTTAACATCATTGACTAGGCATATACGACGTTCACATGATTCCTCTTATTTACCTACAAAAGATCGTGATTTTGAAAACATGAGCTGTCATTTATGTAATAATACGTTTTTGCGTAAATCGTTTGCTACCCATATGCTTATTCACAAAGATTTAAGACCTTATTCTTGTAATATATGCAACCGATCATTTCGAACTAAATGGAATTTAAGAATGCATCAGTGGACTCATATGTCACGTACGCACAAACCTTTTAAATGTACCCAGTGCAAAAGTGCATTTTATCTAAAACATGAATGGGAAGCTCATGTACGTGCACACAATGGTGTTCGTCCATTTACATGCAATGAATGTGGAAAACAATTCATCAGGAAAAAACATTGTATGAGACATATGGCAGAACATAAGGAAAGCAATCGTTCATATGAATGCAAGGAATGTGGCAAAAAGTTCCATCGTAGTTATTATCTGACAGATCACTTAAAGACACACACTGGACAAAAGCCTCATACATGTCATATATGCGGCAAAACAACAAGTTCTAAGTCGAACCACAACAAACATGTCCGTATACATCATGCGAGAGAATCAATAAACACTGAAGGTTGA
- Protein Sequence
- MNQSCCPVCTLYLRPGISLTVHLHTHPKKQVIKALLSLTNQSSPSKSDQENLSDDSSSSSNSSDAGGYSFIIPDRVNNVNKNSLNISESVNEAGRTNFNISEAVNSGPNNVDRNSPNNCPSPKSQNSQALSELRDALEDSPEDDIDIEDNNVTFEDDYPPEFEEDQQDCSIGFQGESNESTQHHEVSEETGSSVVGHFNDPFQSNGNLLENEEYMSHYFYSSENARISHTDPDPQLNPPQYSTLTTMELHPEYLSSNHQEHNLTLDIQTDELMPAHGELSGQESLEPPEPILASIWTMKSSDDILPHTSTAWDDTVHEVSTAARNLMCLKNREEIPKEDTKEIIEKKEVKPLIGKLICPYCKLKFTDIKSRKAHINEEHRNEEGVKKGLMYIKPFSTKIETDLEESAQPTTLKVECGICDQPFENYIQMTLHFIDTHKDKNNLCPTCNIVFPLITEFREHIQNVHPLPCSFCPRKFHSQFNLTTHLKRHLQIKPFVCEQCNKSFASRVKLQEHMNGHLKIKPYTCSMCDQAFSCKSNLNSHIRKQHQSNGTPKDFYCHCGEVFHSLKKLAWHKETHEDKPKQCPWCSERFVHLTSLTRHIRRSHDSSYLPTKDRDFENMSCHLCNNTFLRKSFATHMLIHKDLRPYSCNICNRSFRTKWNLRMHQWTHMSRTHKPFKCTQCKSAFYLKHEWEAHVRAHNGVRPFTCNECGKQFIRKKHCMRHMAEHKESNRSYECKECGKKFHRSYYLTDHLKTHTGQKPHTCHICGKTTSSKSNHNKHVRIHHARESINTEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01305876;
- 90% Identity
- iTF_00019606;
- 80% Identity
- -