Rmeg016903.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhimphoctona megacephalus
Gene Symbol
-
Assembly
GCA_963989365.1
Location
OZ022418.1:24509832-24513856[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 5.9e-06 0.00083 20.4 1.1 1 23 337 359 337 359 0.99
2 12 0.0039 0.55 11.6 6.1 1 23 363 385 363 385 0.98
3 12 0.0007 0.1 13.9 3.8 1 23 390 412 390 412 0.96
4 12 0.00027 0.039 15.2 3.5 1 23 470 492 470 492 0.97
5 12 0.00081 0.12 13.7 1.4 1 23 497 519 497 519 0.97
6 12 0.0001 0.015 16.5 2.2 1 23 570 592 570 592 0.98
7 12 0.0016 0.23 12.8 1.8 2 23 600 621 600 621 0.98
8 12 1e-06 0.00014 22.8 2.1 1 23 632 654 632 654 0.96
9 12 6.4e-05 0.0091 17.2 1.0 1 23 660 682 660 682 0.98
10 12 0.00016 0.023 15.9 0.7 1 23 688 710 688 710 0.98
11 12 4.9e-06 0.00069 20.7 2.0 1 23 716 738 716 738 0.96
12 12 8.7e-05 0.012 16.8 0.3 1 22 744 765 744 765 0.96

Sequence Information

Coding Sequence
ATGGCTGTGACAGCAAGTTATTTTGTTCCGCCGATAAACATAGACAGAGTTTGCCGAATATGTTTGCTCGAAGGAACGAATTTGTCACCAATATTTTGCACTGAACAAGAGGTTGACGAATATTGTGGCTTGCCACAAAAGATTCAAGTATGTGGCTCTATCGAGATACACGAGAACGATGGATTTCCGTCATTGATATGCGACGTCTGTATCTATAAAGCTAGCATCGCTCATGAATTTCGACAACAATGTCAGCAATCTGATGCTCGGTTGAGGCTTCTTTAcgacccaaacaaacccaatgaaacaaatattactGAATCTTGTACGCAGACCGAGCCCCAAGCACGTATAATATTGACGAAGAAGATGCCAAGTTCATCGACAACGTACTACGTGAAGCAAGAATTGCAAGCATCAAATTCGCAGGATTATGCAAGCGCGATCGAGGCGTATACGGATTCTCAAGTACAAACAGTGAGCCGGACTGATCATCCGATAGACTGTCAGGACGAGAAGCTTTTTCTTTGTAACATTGGTTTCGATGGAACAAAAGAAATGACGGAGAAGGAAACGAGCATAATAAGCGTGGAGCCTTCGCATCAGGTGGAATGTCCAATTGTCCAGGCAGAAATAACGACGACACTTATGACGGTAAATGCGAATGGTGAATTAGAGACACAACAATTACTCGTTAAGGACGACAGTCAAAAGTGCGAGGAAACGGCGATCGAAGAGGAATATTTGAACGAGCAAATATTGAACGAAACCGTAATAGACGATAGTATCGAGGCTGACAGTGAGGATTTCGAGGAAAGACAACAGGAAGAACTCCTACAACAGCAGCAagatcaacaacaacaacatcagCAAGAAgaagaaacgataaaaaaacgTACATCATCGAGAAGAGTAAAATCAGCATCTTATAGCGAAGATGAAATGGGCCAAGACAATTATTTCACGACGATAGAAAACGATAAAGAAGAATCCGATACGAAGCCCAAATACAAATGTAACGTTTGCTTGAAACGTTACGCGACCCAAAAAGGCCTGAAAAATCATATGCAAGTACACGAGAAGAATCACAAGTGTCCTATGTGTCATAAACTATTTTACAAGCTAAAAAACATGGAAAATCATCAAAAGCTACACGAGACTAAACCGCACGCTTGTCAAACATGTCACGCAAGTTTTTCAAAATTGCCGAGTTTAACGCGACACTTAAAATCGCATGAAGAGAAGTGTGACGAGGAAAGTCCCTTGGCGTGTGAAATGAACGAGGGGTCGAAAGAAGACATGGAAATGTCAAAACCCGCCGATACACAAAGCGATCTCGAGACTGACGACGAAACGACGATCGTAGCTGGCAACGAAATCGACGAATTTGAGAATGCTCCAGGAATTTACAAGTGCGAAGTATGCAATCAGTTTTGTTCGTCGCTGAAGAATCTGAAGAGACACAGCCTCGTACACGGcgagaaaaaatattcttgCACGGTATGTAAAAAGTGGTTTTTCAGACCGGACACATTAAAGAAACACGCGGAAAAACACGGACATGGTTTGCTGGATAATCTCGTTGATGACAACAAATTGTTTGATTCGGACGATGATAATTTCTCGAATTCATCGATCGGTCACGGGGCGAGAAACGAAACAGCGAAATCGTCGCGAGACGAGAGCGAGGACGATGGTGTTGGAGAATACAAATGTCAGCATTGCGACAAAGTAATGGCAACGAAAAAAGGCTTGAGGAGACACGTGTCCATGCATAAGCCCAAAGCCGAGCCAGCAACTTGTGAAGTTTGTAAAAAAGTATGTGCCAGTCAAGCGCGTCTTAGTTTACACCTCAAGACTCACAACAAACCAAAGGAAAAGGTTCAACGTGAATATCTCTGTCACATATGTAGCAAAGTTTATCCGAGCAATTCTTCGTTGACTTATCACATGAGAACTCATACAGGCGTTAAGCCACatgtatgtaaaatttgtaatagTGGCTTTACGACTACGACAAGTTTGGCTAATCACATAAGAATTCACACGGGTGATAAACCATTCGTTTGTCACGTTTGCAGCGCCGCTTTCGCTGTTAGCTCGGCGTTCAGGCGACACTTAACGAGACACACCGGGGAAGCTAATTATTTGTGTAAAACGTGCGGTAAAGCTTTCAAACGATTGAGCACACTTAAAGAACATACTTACACGCATTCCGGTGAAAAACCATACGTTTGTAAAACATGCGGTGCTGCTTACAGCCACAGCGGTAGTCTTTTTGCTCATCAAAAACGTTGTAGAGTACAATACGGTGAAATGATCGAGGATCACAACGTTGCCCACCATATTCACGTTAATAATGTACAAACTGCCGTTCGTTCACTCGCTGTCATCGGACAGATGTACTGA
Protein Sequence
MAVTASYFVPPINIDRVCRICLLEGTNLSPIFCTEQEVDEYCGLPQKIQVCGSIEIHENDGFPSLICDVCIYKASIAHEFRQQCQQSDARLRLLYDPNKPNETNITESCTQTEPQARIILTKKMPSSSTTYYVKQELQASNSQDYASAIEAYTDSQVQTVSRTDHPIDCQDEKLFLCNIGFDGTKEMTEKETSIISVEPSHQVECPIVQAEITTTLMTVNANGELETQQLLVKDDSQKCEETAIEEEYLNEQILNETVIDDSIEADSEDFEERQQEELLQQQQDQQQQHQQEEETIKKRTSSRRVKSASYSEDEMGQDNYFTTIENDKEESDTKPKYKCNVCLKRYATQKGLKNHMQVHEKNHKCPMCHKLFYKLKNMENHQKLHETKPHACQTCHASFSKLPSLTRHLKSHEEKCDEESPLACEMNEGSKEDMEMSKPADTQSDLETDDETTIVAGNEIDEFENAPGIYKCEVCNQFCSSLKNLKRHSLVHGEKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLVDDNKLFDSDDDNFSNSSIGHGARNETAKSSRDESEDDGVGEYKCQHCDKVMATKKGLRRHVSMHKPKAEPATCEVCKKVCASQARLSLHLKTHNKPKEKVQREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKICNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRVQYGEMIEDHNVAHHIHVNNVQTAVRSLAVIGQMY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00439682;
90% Identity
iTF_00263718; iTF_00263719; iTF_00263720; iTF_00263721; iTF_00262841; iTF_01509063; iTF_00265929; iTF_00828974; iTF_00439682; iTF_00829722; iTF_00266654;
80% Identity
-