Hdol016173.1
Basic Information
- Insect
- Hyposoter dolosus
- Gene Symbol
- -
- Assembly
- GCA_963921915.1
- Location
- OY998138.1:12930719-12933656[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00046 0.044 14.4 0.6 1 20 349 368 349 371 0.94 2 12 0.027 2.6 8.8 8.9 1 23 375 397 375 397 0.98 3 12 0.00032 0.03 14.9 3.9 1 23 402 424 402 424 0.96 4 12 0.00027 0.025 15.2 3.5 1 23 483 505 483 505 0.97 5 12 0.0008 0.076 13.7 1.4 1 23 510 532 510 532 0.97 6 12 0.0001 0.0096 16.5 2.2 1 23 597 619 597 619 0.98 7 12 0.0016 0.15 12.7 1.8 2 23 627 648 627 648 0.98 8 12 1e-06 9.5e-05 22.8 2.1 1 23 659 681 659 681 0.96 9 12 6.3e-05 0.006 17.1 1.0 1 23 687 709 687 709 0.98 10 12 0.00016 0.015 15.8 0.7 1 23 715 737 715 737 0.98 11 12 4.8e-06 0.00046 20.6 2.0 1 23 743 765 743 765 0.96 12 12 8.6e-05 0.0081 16.7 0.3 1 22 771 792 771 792 0.96
Sequence Information
- Coding Sequence
- ATGGCTGTGACCGCGAGTTACTTTGTTCCACCGATGAACATGGACAGAGTTTGTAGAATATGTTTGCTCGAGGGGACAAATTTATCGCCGATATTTTGCACCGAACAAGAAGTCGACGAATTTTCTGGCTTGcctcaaaaaattcaagtatGCGGCTCCATCGAGATCCATGAAAACGATGGATTTCCTTCGTTAATATGCGACGTCTGCATCTACAAAGCCAGCATCGCTCACGAATTTCGACAACAGTGTCAACAGTCGGACGCCCGCCTGAGACTGCTTTACGACCCGAGCAAATCCAACGAAACAAATATTACcGAATCTTGCACGCAGACCGAGCCTCAAACGCGTATAATATTGACGAGGAAGATGCCAAGTCCGTCGACAACGTACTACGTGAAGCAGGAGTTGCAAGCATCGAATTCGCAGGATTATGCAAGCGCGATCGAGGCGTATACGGATTCTCAAGTACAAACGGTCAGCCGAGCCGATCATCCGATAGATTGTCAGGACGAGAAGCTTTTTCTTTGCAACATTGGTTTCGATGGAGCAAAAGAAATgagcgaaaaagaaacgagtatATTGACCGTGGAGCCGTCTCATCAAGTGGAATGTCCGATAGTACAGGCGGaaatgacgacgacgacgacgacgacgacgacgctgATGACGGTAAATGCGAATGGTCAGTTGGAGACACAGCAATTAATCGTCAAGGACGACGGTCAAAAGTGCGAGGAAACGGCGATCGAGGATGAATATATACACGAACAAATATTAAACGAAACCGTAATGGACGATAGTATCGAGCCCGAGAGCGAGGACTTTGAGGAGAGACAACAGGAGGAACTTttgcaacagcaacaacaacagcagcagcagcagcagcaacaacagcaaaaCCAGCTGGAAGAGGgcacgatgaaaaaacgtaaatcgTCGAGAAGAGTGAAATCGGCATCTTACAGCGAAGATGAAATGGGACAAGACAATTATTTTACAAGGatggaaaacgagaaagaagaaagcgATACCAAGCCCAAATACAAATGCAACGTTTGTCTGAAACGTTACGCGACTCAAAAAGGcctgaaaaatcatttaccGGTACACGAAAAGAACCACAAGTGTCATGTTTGtcataaattattttacaagttgaaaaacatggaaaatcatcaaaagCTCCACGAGAGTAAGCCGCACGCTTGCCAAACTTGTCACGCGAgcttttcaaagttggcgagttTAACGCGCCACTTGAAATCGCACGAGGAGAAATGTAACGAGGAGAGTCCTCCGCCGGGGGCGTGTGAAACGAACGATACGGTAAAGGAAGACATGGAATTGTCGAAAACCGATACGCAGAGCGAGCCCGAGACCGACGACGAAACGTCGATCGCGCATGTCAACGAAATCGACGAATTCGAAAACGCTCCGGGAATTTACAAATGCGAAGTGTGCAATCAGTTTTGTTCGTCATTGAAGAATCTGAAAAGACACAGCCTCgtgcacggagagaaaaaatattcttgcaCCGTGTGTAAAAAGTGGTTTTTCCGACCAGACACTTTGAAGAAACACGCGGAAAAACATGGACACGGTTTGCTGGATAATCTCGTTGATGATAACAAATTGTTTGATTCGGACGACGATAATTTCTCCAATTCATCGATCGGCCAGCAAGGAGGGAGAAACGACGCAACggcaggaggaggaggaggaggaggaggaggaggaggagccAAGTCGTCGCGAGACGACAGCGAGGACGACGGTGTCGGTGAATACAAATGTCAGCATTGTGACAAAGTAATGGCAACGAAAAAAGGCTTGAGAAGACACGTCTCGATGCACAAGCCAAAGGCCGAGCCAGCGACTTGTGAAGTTTGTAAAAAAGTATGTGCCAGTCAAGCGCGTCTCAGTTTACACCTCAAGACTCACAACAaaccaaaagaaaaagttCAACGCGAGTATCTCTGTCACATATGTAGCAAAGTATATCCGAGCAATTCTTCGTTGACGTATCACATGAGAACTCACACGGGCGTCAAGCCGCAcgtttgtaaaatttgtaaCAGTGGCTTCACGACCACGACCAGTTTGGCGAATCATATAAGAATCCATACGGGTGACAAGCCATTCGTTTGTCATGTTTGCAGCGCTGCCTTCGCCGTGAGCTCGGCATTCAGGCGACATTTAACGAGACACACCGGCGAAGCTAATTATTTGTGCAAGACGTGCGGCAAGGCTTTCAAACGATTGAGTACCCTCAAGGAGCATACTTACACGCATTCCGGTGAAAAGCCCTACGTTTGTAAAACTTGCGGTGCTGCTTACAGTCACAGTGGTAGTCTTTTTGCTCATCAAAAACGTTGTCGAGTACAATACGGTGAAATGATCGAAGATCACAATGTTGCCCATCATATTCATGTTAACAATGTACAAACAGCGGTTCGCTCCCTCGCTGTCATTGGACAGATGTAttaa
- Protein Sequence
- MAVTASYFVPPMNMDRVCRICLLEGTNLSPIFCTEQEVDEFSGLPQKIQVCGSIEIHENDGFPSLICDVCIYKASIAHEFRQQCQQSDARLRLLYDPSKSNETNITESCTQTEPQTRIILTRKMPSPSTTYYVKQELQASNSQDYASAIEAYTDSQVQTVSRADHPIDCQDEKLFLCNIGFDGAKEMSEKETSILTVEPSHQVECPIVQAEMTTTTTTTTTLMTVNANGQLETQQLIVKDDGQKCEETAIEDEYIHEQILNETVMDDSIEPESEDFEERQQEELLQQQQQQQQQQQQQQQNQLEEGTMKKRKSSRRVKSASYSEDEMGQDNYFTRMENEKEESDTKPKYKCNVCLKRYATQKGLKNHLPVHEKNHKCHVCHKLFYKLKNMENHQKLHESKPHACQTCHASFSKLASLTRHLKSHEEKCNEESPPPGACETNDTVKEDMELSKTDTQSEPETDDETSIAHVNEIDEFENAPGIYKCEVCNQFCSSLKNLKRHSLVHGEKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLVDDNKLFDSDDDNFSNSSIGQQGGRNDATAGGGGGGGGGGGAKSSRDDSEDDGVGEYKCQHCDKVMATKKGLRRHVSMHKPKAEPATCEVCKKVCASQARLSLHLKTHNKPKEKVQREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKICNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRVQYGEMIEDHNVAHHIHVNNVQTAVRSLAVIGQMY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00439682;
- 90% Identity
- iTF_01299482;
- 80% Identity
- -