Cson019272.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Campoletis sonorensis
Gene Symbol
-
Assembly
GCA_013761285.1
Location
JACEOJ010010696.1:4017-6803[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 6.7e-06 0.00055 20.4 1.1 1 23 340 362 340 362 0.99
2 12 0.017 1.4 9.7 6.0 1 23 366 388 366 388 0.97
3 12 0.0008 0.066 13.9 3.8 1 23 393 415 393 415 0.96
4 12 0.00031 0.025 15.2 3.5 1 23 472 494 472 494 0.97
5 12 0.00093 0.076 13.7 1.4 1 23 499 521 499 521 0.97
6 12 0.00012 0.0095 16.5 2.2 1 23 572 594 572 594 0.98
7 12 0.0018 0.15 12.8 1.8 2 23 602 623 602 623 0.98
8 12 1.2e-06 9.5e-05 22.8 2.1 1 23 634 656 634 656 0.96
9 12 7.3e-05 0.0059 17.2 1.0 1 23 662 684 662 684 0.98
10 12 0.00019 0.015 15.9 0.7 1 23 690 712 690 712 0.98
11 12 5.6e-06 0.00045 20.7 2.0 1 23 718 740 718 740 0.96
12 12 9.9e-05 0.0081 16.8 0.3 1 22 746 767 746 767 0.96

Sequence Information

Coding Sequence
ATGGCTGCAACAGCAAGTTATTTTGTTCCACCGTTAAACATGGACAGAGTTTGCCGAATATGTTTGCTCGAAGGAACAAACTTGTCACCAATATTTTGCACCGCCCAAGAAGTTGACGAATATTCTGGCTTGCCGCAAAAGATTCAAGTCTGTGGCTCCATCGAGATACACGAGAACGATGGATTTCCGTCGTTGATTTGTGACGTCTGTATTTACAAAGCTAGCATCGCTCATGAATTTCGACAACAATGTCAGCAGTCTGACGCTCGCTTGAGACTTCTCTACGACCCGAACAAAGCCAATGAAACAAATATTACCGAAACTTGTACGCAGACCGAGGCCCAAACGCGTATAATATTGACGAGGAAAATGCCAAGTCCGTCGACAACGTATTACGTGAAGCAAGAGTTGCAAGCATCGAATTCGCAGGATTATGCAAGCGCGATTGAGGCGTACACGGATTCTCAAGTACAAACAGTGTCTCGAGCTGAGCATCCGATAGATTGTCAGGAAGAGAAGCTTTTTCTTTGTAACATTGGTTTCGATGGAGCGAAAGAAATGACGGAGAAAGAAACGAGTATATTGACGGTGGAGCCGTCTCATCAAGTGGAATGTCCGATTGTCCAGGGGGAAATAACGACGACACTTATGACGGTAAATGCGAATGGTCAGTTAGAGACACAAGAATTAATCGTTAAGGACGACAGTCAAAAGTGTGAGGAAACACCGATCGAGGAGGAATATTTAAACGATCAAATGTTGAACGAAACCGTAATGGACGATAGTATCGAGGCTGACAGCGAGGATTTCGAAGAAAGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAGGAACGATAAAAAAACGTACGTCATCGAGGACAGTTAAATCAGCATCTTACAGCGAAGATGAAATGGGACAAGACAATTATTTCACAACGATAGATAACGATAAAGAAGAATCGGAAACCAAGCCCAAATACAAATGTAACGTTTGCCTGAAACGTTACGCGACCCAAAAAGGCCTAAAAAATCATATGCAAGTACACGAGAAAAACCACAAGTGTCCTGTGTGTCATAAATTATTTTTCAAGTTAAAAAACATGGAAAACCATCGAAAGCTTCACGAGACCAAACCGCACGCTTGTCAAACCTGTCACGCGAGTTTTTCGAAATTGCCGAGTTTGACACGACATTTGAAATCGCACGAAGAGAAGTGTAACGAGGAGAGTCCTCCAGCGTGTGAAACAAACGATATGGGAAAAGAAGATGTAGAATTCTCTAAAACCGACACACAGAGTGACCTCGAGACTGACGACGAAACGACGATCGCTGCTGGCAACGAAATCGACGAATTCGAGAACGCTCCAGGAATTTACAAATGCGAAGTGTGCAATCAATTTTGTTCGTCGTTGAAAAATCTTAAGAGACACAGTCTCGTACACGGCGAGAAAAAATACTCTTGCACCGTATGTAAAAAGTGGTTTTTCAGACCAGACACTTTGAAAAAGCACGCAGAAAAACACGGACACGGTTTGCTGGATAATCTCGTCGACGACAACAAATTGTTTGATTCTGACGACGATAATTTCTCGAATTCGTCGATTGGCCAAGGGACGAGAAACGAAGCAGCGAAATCGTCAAGAGACGAGAGTGAGGACGACGGTGTCGGCGAATATAAATGTCAACATTGTGACAAAGTAATGGCTACGAAAAAAGGCTTAAGAAGACACGTGTCGATGCATAAACCCAAAGCCGAGCCAGCTACTTGTGAAGTTTGTAAAAAAGTGTGTGCCAGTCAAGCGCGCCTTAGTTTACACCTCAAAACTCACAACAAACCAAAGGAAAAGGTTCAACGCGAATATCTCTGTCACATATGTAGCAAAGTATATCCGAGCAATTCTTCGTTGACTTATCACATGAGAACTCATACAGGCGTTAAGCCACATGTATGTAAAATTTGTAACAGTGGCTTCACGACTACGACCAGTTTGGCGAATCACATAAGAATTCACACGGGTGATAAGCCCTTCGTTTGTCATGTTTGTAGCGCTGCCTTCGCCGTTAGCTCGGCATTCAGACGTCATTTAACTAGACACACCGGCGAAGCTAATTATTTGTGTAAAACGTGTGGTAAAGCTTTTAAACGATTGAGCACACTTAAGGAGCATACTTACACGCATTCCGGTGAAAAACCATACGTTTGTAAAACATGCGGTGCTGCTTACAGCCACAGCGGTAGTCTTTTTGCTCATCAAAAACGTTGTAGAGTACAATACGGTGAAATGATCGAAGATCACAATGTTGCTCATCATATTCACGTTAATAATGTACAAACTGCTGTTCGTTCGCTCGCGGTCATTGGACAGATGTACTAA
Protein Sequence
MAATASYFVPPLNMDRVCRICLLEGTNLSPIFCTAQEVDEYSGLPQKIQVCGSIEIHENDGFPSLICDVCIYKASIAHEFRQQCQQSDARLRLLYDPNKANETNITETCTQTEAQTRIILTRKMPSPSTTYYVKQELQASNSQDYASAIEAYTDSQVQTVSRAEHPIDCQEEKLFLCNIGFDGAKEMTEKETSILTVEPSHQVECPIVQGEITTTLMTVNANGQLETQELIVKDDSQKCEETPIEEEYLNDQMLNETVMDDSIEADSEDFEERXXXXXXXXXXXXXXXXXXXXXXEGTIKKRTSSRTVKSASYSEDEMGQDNYFTTIDNDKEESETKPKYKCNVCLKRYATQKGLKNHMQVHEKNHKCPVCHKLFFKLKNMENHRKLHETKPHACQTCHASFSKLPSLTRHLKSHEEKCNEESPPACETNDMGKEDVEFSKTDTQSDLETDDETTIAAGNEIDEFENAPGIYKCEVCNQFCSSLKNLKRHSLVHGEKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLVDDNKLFDSDDDNFSNSSIGQGTRNEAAKSSRDESEDDGVGEYKCQHCDKVMATKKGLRRHVSMHKPKAEPATCEVCKKVCASQARLSLHLKTHNKPKEKVQREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKICNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRVQYGEMIEDHNVAHHIHVNNVQTAVRSLAVIGQMY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00439682;
90% Identity
iTF_01299482;
80% Identity
iTF_00263718;