Ccap008328.1
Basic Information
- Insect
- Campoplex capitator
- Gene Symbol
- -
- Assembly
- GCA_037576405.1
- Location
- JARBWI010000019.1:185365-188323[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.2e-05 0.0013 19.4 1.7 1 23 329 351 329 351 0.99 2 12 0.0023 0.26 12.2 5.5 1 23 355 377 355 377 0.98 3 12 0.00076 0.084 13.7 4.3 1 23 382 404 382 404 0.96 4 12 0.00025 0.028 15.2 3.5 1 23 461 483 461 483 0.97 5 12 0.00076 0.085 13.7 1.4 1 23 488 510 488 510 0.97 6 12 9.6e-05 0.011 16.6 2.2 1 23 561 583 561 583 0.98 7 12 0.0025 0.28 12.1 1.2 2 23 591 612 591 612 0.98 8 12 9.5e-07 0.00011 22.9 2.1 1 23 623 645 623 645 0.96 9 12 6e-05 0.0067 17.2 1.0 1 23 651 673 651 673 0.98 10 12 0.00015 0.017 15.9 0.7 1 23 679 701 679 701 0.98 11 12 4.6e-06 0.00051 20.7 2.0 1 23 707 729 707 729 0.96 12 12 8.2e-05 0.0091 16.8 0.3 1 22 735 756 735 756 0.96
Sequence Information
- Coding Sequence
- ATGGATAGAGTTTGTCGAATATGTTTGCTCGAAGGGACCAATTTATCGCCAATATTTTGCACCGAACAAGAGGTCGATGAATATTCTGGTTTGCCACAAAAGATTCAAGTATGTGGCTCTATCGAAATACACGAGAACGATGGTTTTCCGTCATTGATATGTGACGTCTGTATTTACAAAGCCAGCATCGCTCATGAATTTCGACAACAGTGTCAGCAATCTGATGCACGATTGAGGCTTCTTTACGACCCAAACAAATCCAATGGAACAGATATTACCGAATCTTGTACGCAGACCGAGCCCCAAACCCGTATTATATTGACGAGGAAGATGCCAAGTCCGTCGACAACGTACTACGTGAAGCAGGAGTTGCAAGCATCAAATTCACAGGATTATGCAAGTGCGATTGAGGCGTATACGGATTCTCAAGTACAAACAGTGAGTCAGACTGATCACCCGATAGACTGTCAGGACGACAAGctttttctttgtaatattGGTTTCGACGGACCAAAAGAAATGACGGAGAAGGAAACGAGCATAATGAGTGTGGAGCCTTCACATCAAGTGGAATGTCCGATTGTCCAAACGGAAATGACGACGACACTCATGACCGTAAATGCGAATGGTCACTTGGAGACACAACAATTAATTGTTAAGGACGACAGTCAGAAGTGCGAGGGTACGCCGATCGAGGAggaatatttgaatgaacaaaTATTGAACGAAACCGTAATAGACGATAATATCGAAGCTGAGAGTGAAGATTTCGAGGAAAGACAACAAGAAGAACTTTTGCAACAGCAGCAagagcaacaacagcaacaacaacaacaacaacatcaacaagaagaagaaacgatgaaaaaacgtaCATCATCGAGAAGAGTAAAATCAGCATCCTACAGCGAAGATGAAATGGGCCAAGACAATTATTTCACGACGATAGAAAATGACACAGAAGAATCCGACACGAAGCCCAAATACAAATGCAACGTTTGCCTGAAACGTTACACGACCCAAAAGGGCCTGAAAAATCATCTGCAAGTACACGAGAAAAATCACAAGTGTCCTGTCTGTCACAAACTATTTTACAAGCtaaaaaacatggaaaatcATCAAAAGTTACACGAGACTAAACCGCACGCTTGTCGAACGTGTCACgcgagtttttcaaaattggcGAGTTTAACGCGACACTTGAAATCGCACGAAGATAAATGTGAGGAGGAAAGTTCGTTGGCGTGTGAAGCGAACGAGGTTGCGAAGGAAGAAATGGAAATGTTGAAAACCGACACGCACAGCGACCTCGAGACTGACGACGAAACGACTATCGTAGCTGGCACCGAAATCGACGAATTTGAGAATGCTCCAGGAATATACAAGTGCGAAGTgtgcaatcaattttgttCGTCGTTGAAGAATCTGAAGAGACACAGCCTTGTACacggtgagaaaaaatattcttgtaCGGTAtgtaaaaaatggtttttcagACCGGACACATTGAAGAAACACGCGGAAAAACATGGACATGGTTTGCTCGATAATCTCGTTGACGACAACAAATTGTTCGATTCGGACGATGATAATTTCTCGAATTCATCGATCGGCCACGGGGTAAAAAACGATGCAGCTAAATCCTCCCGAGACGAGAGCGAGGACGATGGTGTTGGAGAATACAAATGTCAGCATTGCGACAAAGTAATGGCAACGAAAAAAGGCTTGAGGAGACACGTCTCGATGCATAAGCCTAAAGCCGAGCCAGCGACTTgtgaaatttgtaaaaaagtaTGCGCCAGTCAAGCGCGCCTCGGTTTGCACCTCAAGACCCACAACAAACCAAAGGAAAAGGTTCAGCGTGAATATCTCTGTCACATATGTAGCAAAGTTTATCCGAGCAATTCTTCGTTGACTTATCACATGAGAACTCATACGGGCGTTAAACCACATGTATGCAAAATTTGTAACAGTGGCTTCACGACTACGACCAGTTTGGCTAATCACATAAGAATTCATACAGGTGATAAACCGTTCGTTTGTCATGTTTGCAGCGCCGCTTTCGCTGTTAGCTCGGCGTTCAGACGACACTTAACGAGACACACCGGTGAAGCTAATTATTTGTGTAAAACGTGCGGTAAAGCGTTCAAACGATTGAGCACCCTCAAAGAGCACACTTATACGCATTCCGGCGAAAAGCCCTACGTTTGTAAAACATGCGGTGCTGCTTACAGCCACAGCGGTAGTCTTTTTGCTCATCAAAAACGTTGTAGAGTACAATACAGTGAAATGATCGAGGATCACAATGTTGCCCATCATATTCACGTTAATAATGTACAAACCGCCGTTCGTTCACTCGCTGTCATTGGACAGATGTATTaa
- Protein Sequence
- MDRVCRICLLEGTNLSPIFCTEQEVDEYSGLPQKIQVCGSIEIHENDGFPSLICDVCIYKASIAHEFRQQCQQSDARLRLLYDPNKSNGTDITESCTQTEPQTRIILTRKMPSPSTTYYVKQELQASNSQDYASAIEAYTDSQVQTVSQTDHPIDCQDDKLFLCNIGFDGPKEMTEKETSIMSVEPSHQVECPIVQTEMTTTLMTVNANGHLETQQLIVKDDSQKCEGTPIEEEYLNEQILNETVIDDNIEAESEDFEERQQEELLQQQQEQQQQQQQQQHQQEEETMKKRTSSRRVKSASYSEDEMGQDNYFTTIENDTEESDTKPKYKCNVCLKRYTTQKGLKNHLQVHEKNHKCPVCHKLFYKLKNMENHQKLHETKPHACRTCHASFSKLASLTRHLKSHEDKCEEESSLACEANEVAKEEMEMLKTDTHSDLETDDETTIVAGTEIDEFENAPGIYKCEVCNQFCSSLKNLKRHSLVHGEKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLVDDNKLFDSDDDNFSNSSIGHGVKNDAAKSSRDESEDDGVGEYKCQHCDKVMATKKGLRRHVSMHKPKAEPATCEICKKVCASQARLGLHLKTHNKPKEKVQREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKICNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRVQYSEMIEDHNVAHHIHVNNVQTAVRSLAVIGQMY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00439682;
- 90% Identity
- iTF_01299482;
- 80% Identity
- -