Crap008126.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Campoletis raptor
Gene Symbol
-
Assembly
GCA_948107755.1
Location
OX403631.1:12391306-12394092[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 5.3e-06 0.00045 20.4 1.1 1 23 341 363 341 363 0.99
2 12 0.013 1.1 9.7 6.0 1 23 367 389 367 389 0.97
3 12 0.00063 0.054 13.9 3.8 1 23 394 416 394 416 0.96
4 12 0.00024 0.021 15.2 3.5 1 23 473 495 473 495 0.97
5 12 0.00073 0.063 13.7 1.4 1 23 500 522 500 522 0.97
6 12 9.2e-05 0.0079 16.5 2.2 1 23 573 595 573 595 0.98
7 12 0.0014 0.12 12.8 1.8 2 23 603 624 603 624 0.98
8 12 9.1e-07 7.8e-05 22.8 2.1 1 23 635 657 635 657 0.96
9 12 5.7e-05 0.0049 17.2 1.0 1 23 663 685 663 685 0.98
10 12 0.00015 0.013 15.9 0.7 1 23 691 713 691 713 0.98
11 12 4.4e-06 0.00037 20.7 2.0 1 23 719 741 719 741 0.96
12 12 7.8e-05 0.0067 16.8 0.3 1 22 747 768 747 768 0.96

Sequence Information

Coding Sequence
ATGGCTGTAACAGCAAGTTATTTTGTTCCACCATTAAACATGGATAGAGTTTGCCGAATATGTTTGCTCGAAGGAACAAATTTGTCACCAATATTTTGCACTGCACAAGAAGTTGACGAATATTCTGGCTTGCCACAAAAGATTCAAGTCTGTGGCTCGATCGAGATACACGAGAACGATGGATTTCCGTCATTGATTTGTGACGTTTGTATCTACAAAGCTAGCATCGCTCATGAATTTCGACAACAATGTCAGCAGTCTGACGCCCGTTTGAGACTTCTCTACGACCCGAACAAAGCCAATGAAACAAATATTACCGAAACTTGTACGCAGACCGAGCCCCAAACGCGTATAATATTGACGAGGAAAATGCCAAGTCCATCGACAACGTATTACGTGAAGCAAGAGTTGCAAGCAACGAATTCGCAGGATTATGCAAGCGCGATTGAGGCGTACACGGATTCTCAAGTACAAACAGTGACTCGAGCTGACCATCCGATAGATTGTCAGGAAGAGAAGCTTTTTCTTTGTAACATTGGTTTCGATGGAGCAAAAGAAATGGCAGAAAAGGAAACGAGTATATTGACCGTGGAATCTGCTCATCAAGTGGAATGTCCGATTGTCCAGGCGGAAATGACGACGACTCTTATGACGGTAAATGCGAATGGTCAGTTAGAGACACAAGAATTAATCGTTAAGGACGACAGTCAAAAGTGTGAGGAAACGGCGATCGAGGAGGAATATTTACACGATCAAATATTGAACGAAACCGTGATGGACGATAGTATCGAGGCTGACAGTGAGGATTTCGAAGAAAGacaacaagaagaacttctgcaacagcaacaagagcaacaacaacaacaacaacagcagcagcagcaagaagaaggaacgataaaaaaacgtacgtcagcgagaAGAGTTAAATCGGGATCTTACAGCGAAGATGAAATGGGACAAGACAATTATTTCACAACGATAGATAACGATAAAGAAGAATCTGAAACCAAACCCAAATACAAATGTAACGTTTGCCTGAAACGTTACGCGACCCAAAAAGGCCTAAAAAATCATATGCAAGTACACGAGAAAAACCACAAGTGTCCTGTGTGTCATAAATTATTTTTCAAGTTAAAAAACATGGAAAACCATCGAAAGCTGCACGAAACTAAACCACACGCTTGTCAAACCTGTCACGCGAGTTTTTCGAAATTGCCGAGTTTAACACGACATTTAAAATCGCACGAAGAGAAATGTAACGAGGAGAGTCCTCCGGTGTGTGAAACAAACGATACGGGGAAAGAAGACGTAGAATTTTCGAAAACCGATACACAAAGCGACCTCGAGACTGACGACGAAACGACGATCGCAGCTGGCAACGAAATCGACGAATTTGAGAACGCTCCAGGAATTTACAAATGCGAAGTGTGCAATCAATTTTGTTCATCGTTGAAAAATCTGAAAAGACACAGTCTCGTACATGGCGAGAAAAAATATTCCTGCACCGTATGTAAAAAGTGGTTTTTCAGACCAGACACTTTGAAAAAACACGCTGAAAAACACGGACACGGTTTGCTGGATAATCTCGTTGATGACAACAAATTGTTTGATTCTGACGACGATAATTTCTCGAATTCATCGATTGGCCAAGGGACGAGAAACGAAACAGCGAAATCATCACGAGACGAGAGCGAGGACGACGGTGTCGGCGAATATAAATGTCAACATTGTGACAAAGTTATGGCAACGAAAAAAGGCTTGAGAAGACACGTGTCGATGCATAAACCCAAAGCCGAGCCAGCTACTTGTGAAGTTTGTAAAAAAGTATGTGCCAGCCAAGCGCGTCTTAGTTTACACCTTAAAACTCACAACAAACCAAAGGAAAAGGTTCAACGCGAATATCTCTGTCACATATGTAGCAAAGTATATCCGAGCAATTCTTCGTTGACTTATcacatgagaactcatacaggcgttaagccacatgtatgtaaaatttgtaacagtggctttacgactacgaccagtttggctaatcacataagaattcacacgggtgataaacccttcgtttgtcatgtttgtagcgctgccttcgccgttagctccgcattcagacgacatttaacgagacacaccggtgaagctaattatttgtgtaaaacgtgtggtaaagctttcaaacgattgagcacactcaaggagcatacttacacgcattccggtgaaaaaccatacgtttgtaaaacatgcggtGCTGCTTACAGCCACAGCGGTAGTCTTTTTGCTCATCAAAAACGTTGTAGAGTACAATACGGTGAAATGATCGAAGATCACAATGTTGCTCATCATATTCACGTCAATAATGTACAAACTGCTGTTCGTTCGCTCGCGGTCATTGGACAGATGTACTAA
Protein Sequence
MAVTASYFVPPLNMDRVCRICLLEGTNLSPIFCTAQEVDEYSGLPQKIQVCGSIEIHENDGFPSLICDVCIYKASIAHEFRQQCQQSDARLRLLYDPNKANETNITETCTQTEPQTRIILTRKMPSPSTTYYVKQELQATNSQDYASAIEAYTDSQVQTVTRADHPIDCQEEKLFLCNIGFDGAKEMAEKETSILTVESAHQVECPIVQAEMTTTLMTVNANGQLETQELIVKDDSQKCEETAIEEEYLHDQILNETVMDDSIEADSEDFEERQQEELLQQQQEQQQQQQQQQQQEEGTIKKRTSARRVKSGSYSEDEMGQDNYFTTIDNDKEESETKPKYKCNVCLKRYATQKGLKNHMQVHEKNHKCPVCHKLFFKLKNMENHRKLHETKPHACQTCHASFSKLPSLTRHLKSHEEKCNEESPPVCETNDTGKEDVEFSKTDTQSDLETDDETTIAAGNEIDEFENAPGIYKCEVCNQFCSSLKNLKRHSLVHGEKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLVDDNKLFDSDDDNFSNSSIGQGTRNETAKSSRDESEDDGVGEYKCQHCDKVMATKKGLRRHVSMHKPKAEPATCEVCKKVCASQARLSLHLKTHNKPKEKVQREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKICNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRVQYGEMIEDHNVAHHIHVNNVQTAVRSLAVIGQMY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00439682;
90% Identity
iTF_01299482;
80% Identity
-