Hdid011981.1
Basic Information
- Insect
- Hyposoter didymator
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold95:2022843-2027159[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0043 0.37 11.2 0.4 1 20 349 368 349 371 0.94 2 12 0.0022 0.19 12.1 5.5 1 23 375 397 375 397 0.98 3 12 0.00063 0.053 13.9 3.8 1 23 402 424 402 424 0.96 4 12 0.00024 0.021 15.2 3.5 1 23 485 507 485 507 0.97 5 12 0.00073 0.062 13.7 1.4 1 23 512 534 512 534 0.97 6 12 9.1e-05 0.0078 16.5 2.2 1 23 592 614 592 614 0.98 7 12 0.0014 0.12 12.7 1.8 2 23 622 643 622 643 0.98 8 12 9e-07 7.7e-05 22.8 2.1 1 23 654 676 654 676 0.96 9 12 5.7e-05 0.0048 17.1 1.0 1 23 682 704 682 704 0.98 10 12 0.00015 0.012 15.9 0.7 1 23 710 732 710 732 0.98 11 12 4.3e-06 0.00037 20.7 2.0 1 23 738 760 738 760 0.96 12 12 7.8e-05 0.0066 16.7 0.3 1 22 766 787 766 787 0.96
Sequence Information
- Coding Sequence
- ATGGCTGTGACCGCGAGTTACTTTGTCCCACCGATGAACATGGACAGAGTTTGTCGAATATGTTTGCTCGAGGGGACAAATTTGTCACCAATATTTTGCACCGAACAAGAAGTTGACGAATTTTCTGGATTGCCTCAAAAAATTCAAGTATGCGGCTCCATCGAGATCCACGAGAACGATGGATTCCCGTCGTTAATATGCGACGTCTGCATCTACAAAGCCAGCATCGCTCACGAATTTCGACAACAGTGTCAACAGTCGGACGCCCGCTTGAGACTGCTTTACGACCCGAACAAATCCAACGAAACAAATATTACCGAATCTTGTACGCAGACGGAGCCTCAAACGCGTATAATATTGACGAGGAAGATGCCAAGTCCGTCTACGACGTACTACGTGAAGCAGGAGTTGCAAGCATCAAATTCGCAGGATTATGCAAGCGCGATCGAGGCGTATACGGATTCTCAAGTACAAACGGTGAGCCGAGCCGATCATCCGATGGATTGTCAGGACGAGAAGCTTTTTCTTTGCAACATTGGTTTCGATGGAGCAAAAGAAATGAGCGATAAGGAAACGAGTATAATGAGCGTCGAGCCGTCTCATCAAGTGGAATGTCCGATCGTACAGGCGGAAATGACGACGACGACGACGACGACGACGACGCTGATGACGGTAAATGCGAATGGTCAGTTGGAGACACAGCAATTAATCGTTAAGGACGACGGTCAAAAGTGCGAGGAAACGGCGATCGAGGAGGAATATATACACGAACAAATATTAAACGAAACCGTTATGGACGATAGTATCGAGCCTGAGAGCGAAGACTTTGAGGAGAGACAACAGGAGGAACTTTTGCAACAGCAACAAGATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAAACCAGCTGGAAGAGGGCACGATGAAAAAACGTAAATCGTCGAGGAGAGTCAAGTCGGCATCTTACAGCGAAGATGAAATGGGACAAGACGATTATTTCACAACGATGGAAAATGAGAAAGAAGAAAATGATACCAAGCCAAAATACAAATGCAACGTTTGTCTGAAACTTTACGCGACCCAAAAAGGCCTGAAGAATCATTTGCCGGTACACGAGAAGAACCACAAGTGTCCCGTTTGTCATAAATTATTTTACAAGTTGAAAAACATGGAAAATCATCAAAAGCTCCACGAGAGTAAACCGCACGCTTGCCAAACTTGTCACGCAAGCTTTTCAAAGTTGCCGAGTCTAACGCGCCACTTGAAATCGCACGAGGAGAAATGTAACGAGGAGAGTCCTCCGCCGCCGCCGCAGGCGTGTGAAACGAACGATACGGTGAAGGAGGACATGGAATTGTCGAAAACCGATACGCAGAGCGAGCCCGAGACCGACGACGAAACGTCGATCGCGCATGTCAACGAGATCGACGAATTCGAGAACGCTCCGGGAATTTACAAATGCGAAGTGTGCAATCAGTTTTGTTCGTCACTGAAGAATCTGAAAAGACACAGCCTCGTGCACGGAGAGAAAAAATATTCTTGCACCGTGTGTAAAAAGTGGTTTTTCCGACCAGACACTTTGAAGAAACACGCGGAAAAGCATGGACACGGTTTGCTGGATAACCTCGTCGATGATAACAAATTGTTTGATTCGGACGACGATAATTTCTCCAATTCATCGATTGGCCAGCAAGGAGGGAGAAACGACGGAACGGCAGCGGGAGGAGGAGCCAAGTCGTCGCGAGACGACAGCGAGGACGACGGTGTCGGTGAATACAAATGTCAGCATTGTGACAAAGTAATGGCAACGAAAAAAGGCTTGAGACGACACGTCTCGATGCACAAGCCAAAGGCCGAGCCAGCGACTTGCGAAGTTTGTAAAAAAGTATGTGCCAGTCAAGCGCGTCTCAGTCTACACCTCAAGACCCACAACAAACCAAAAGAAAAAGTTCAACGCGAGTATCTCTGTCACATATGTAGCAAAGTATATCCGAGCAATTCTTCGTTGACGTATCACATGAGAACTCATACGGGCGTCAAGCCGCACGTTTGTAAAATTTGTAACAGCGGCTTTACGACGACCACCAGTTTGGCGAATCACATAAGAATCCACACGGGTGACAAGCCATTCGTCTGTCATGTTTGCAGCGCTGCCTTTGCCGTGAGCTCGGCATTCAGGCGACATTTAACGAGACACACCGGCGAAGCCAATTATTTGTGCAAGACGTGCGGTAAGGCTTTCAAACGATTGAGTACCCTCAAGGAGCATACTTACACGCATTCCGGTGAAAAGCCCTACGTTTGTAAAACTTGCGGTGCTGCTTACAGTCACAGCGGTAGTCTTTTTGCTCATCAAAAACGTTGTCGAGTACAATACGGTGAAATGATCGAAGATCACAATGTTGCCCATCATATTCATGTCAACAATGTACAAACAGCGGTTCGCTCCCTCGCTGTCATTGGACAGATGTATTAA
- Protein Sequence
- MAVTASYFVPPMNMDRVCRICLLEGTNLSPIFCTEQEVDEFSGLPQKIQVCGSIEIHENDGFPSLICDVCIYKASIAHEFRQQCQQSDARLRLLYDPNKSNETNITESCTQTEPQTRIILTRKMPSPSTTYYVKQELQASNSQDYASAIEAYTDSQVQTVSRADHPMDCQDEKLFLCNIGFDGAKEMSDKETSIMSVEPSHQVECPIVQAEMTTTTTTTTTLMTVNANGQLETQQLIVKDDGQKCEETAIEEEYIHEQILNETVMDDSIEPESEDFEERQQEELLQQQQDQQQQQQQQQQNQLEEGTMKKRKSSRRVKSASYSEDEMGQDDYFTTMENEKEENDTKPKYKCNVCLKLYATQKGLKNHLPVHEKNHKCPVCHKLFYKLKNMENHQKLHESKPHACQTCHASFSKLPSLTRHLKSHEEKCNEESPPPPPQACETNDTVKEDMELSKTDTQSEPETDDETSIAHVNEIDEFENAPGIYKCEVCNQFCSSLKNLKRHSLVHGEKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLVDDNKLFDSDDDNFSNSSIGQQGGRNDGTAAGGGAKSSRDDSEDDGVGEYKCQHCDKVMATKKGLRRHVSMHKPKAEPATCEVCKKVCASQARLSLHLKTHNKPKEKVQREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKICNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRVQYGEMIEDHNVAHHIHVNNVQTAVRSLAVIGQMY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00439682;
- 90% Identity
- iTF_01299482;
- 80% Identity
- -