Rmor030274.1
Basic Information
- Insect
- Rhagium mordax
- Gene Symbol
- -
- Assembly
- GCA_963680705.1
- Location
- OY796659.1:79201108-79203116[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 6.3e-07 0.021 16.8 0.0 21 49 292 320 287 323 0.93 2 7 0.68 2.2e+04 -2.5 0.0 25 45 376 396 359 399 0.73 3 7 0.00081 27 6.8 0.0 21 44 400 423 392 430 0.90 4 7 0.034 1.1e+03 1.6 0.1 27 46 465 484 458 492 0.84 5 7 0.094 3.1e+03 0.2 0.0 21 43 487 509 483 514 0.81 6 7 0.0051 1.7e+02 4.2 0.1 11 48 504 542 498 544 0.82 7 7 1e-05 0.33 12.9 0.1 21 48 544 571 539 573 0.89
Sequence Information
- Coding Sequence
- ATGGAAGTAAACAAAGCAAATACTATTTCTATTAATgactttccaaaaatatgtcACGTGTGTTTATTTCCTAATGATTTGCTGCCAGTTATGCCCCTGGATTTagtagaattttataaaactataataaaCGTTAAGATTATTGTGGATGATCAATTTCCCAAAAATATATGTAAGGGCTGTGTAAGGGAACTAGAAAATATTGCTTCGTTTATAGAGAAATGTAAGGATAATTATTCTATTCTCACAGTAATCCTAGAACAAGAAAAAGATAGAAAGTTTAATACCGTCTATGACGCACCAGACAATGTGTCATTGTCAGACGATGAATTTCATTCAATCGACGGAACCGCCCTGAAAATTGAAAACGGTTCCTGTGTATCTGAATCTATAAAAGTTGAAACTAAATCTGAAGATGAAAGTAACAGTACCAgggcaaaaaattttcattgtgCAAATTGTGGAAAAggattttataccaaaagagaGTTGGTTGTTCATATAAAAATACATTCCGATTCTAGACCTTTTTCTTGTCACGATTGCAATATGAAGTTCAAATTTCGACAATCTTTGCAGAGGCACCGATTAATTCATAGTAGTATTAGAGCATATAAGTGTGACGTATGCGGAAAAGGATTTAAAAGAGCTTTCTCAAGGAACAAACACAGGAGAATTCATAACAGAGTCAAAATGAATTCGTCATTGGAGTCTAAATATAGCTGCACACAGTGTGATCGAATTCTCACTTCACATTCTGCCCTAAGCAGTCATATGAAAACTCATACGGGCGAAAAACCATACTCTTGTTCTTATTGTGGCAAACGCTTTCCCTATGTCAGCAGTTTAACTGTCCATACTCGTTTACATACAGGGGAAACCCCTTTTATTTGCCCCATTTGCAATAAAGGCTATCGTAGTTCAACTAGTCTGAAAAAGCACAGAGAAGTCAAACATTATGAAATCGGAGACATTAAAGAGGAAAGAGAAAATGAAGACGATCAGCTAAAGACTGAAGACGACTCGAAAAATACAGATAGACGTGaatgtaaaatttgtaataaaatgcttCACAAACATGGATTTGGCACTCACATGAGAATTCACACTGTAGAGAAGAAGAAATTCGTATGCACGTTTTGCGATAagaattttcagaaaaattccCATCTTGAAAGGCACATAAGAATACATACAGGTGAGAGACCATATGTTTGCAAATTATGCAACAAAACCTTTAAACAAGATGGAGACTTGAAGCGACATGTACTGATCCACACCGGCGAAAAACAATTTCAATGCCAACACTGCGGTAAACAATATTACACTAAGGGGTCTCTAGATACCCACATGGCTGTTCATACTGGAGCGAGAAGGCCTGTTAACTATGAATGCAACATCTGCAAAAAGTCTTTTAGACAATGCACACATTTCAAAACGCATATGAATTCCCACACAGGTGAAAAACCTTATTTGTGCACAATCTGTGGTAAATCGTTCACAGCAAGTGGAACCTTAAAAGTACATACAAGGATTCACACAGGTGAAACGCCTTTCGTTTGTTCACACTGCAATAAAGGTTATAACAATTCTAGCAGCTTAAAGAGGCACATCATGAGAAATCATACTGGGGAAAAGCCGCATGTATGTATGATCTGCCACAAAGGTTTCCATGACTCTACGAATTTAAAAAGGCACATAAAACGAGTACATTCCGTAGTGGAAATCAAAAAAGATAATGACGTGATAACGATGAATAACGCTGCATTGTAG
- Protein Sequence
- MEVNKANTISINDFPKICHVCLFPNDLLPVMPLDLVEFYKTIINVKIIVDDQFPKNICKGCVRELENIASFIEKCKDNYSILTVILEQEKDRKFNTVYDAPDNVSLSDDEFHSIDGTALKIENGSCVSESIKVETKSEDESNSTRAKNFHCANCGKGFYTKRELVVHIKIHSDSRPFSCHDCNMKFKFRQSLQRHRLIHSSIRAYKCDVCGKGFKRAFSRNKHRRIHNRVKMNSSLESKYSCTQCDRILTSHSALSSHMKTHTGEKPYSCSYCGKRFPYVSSLTVHTRLHTGETPFICPICNKGYRSSTSLKKHREVKHYEIGDIKEERENEDDQLKTEDDSKNTDRRECKICNKMLHKHGFGTHMRIHTVEKKKFVCTFCDKNFQKNSHLERHIRIHTGERPYVCKLCNKTFKQDGDLKRHVLIHTGEKQFQCQHCGKQYYTKGSLDTHMAVHTGARRPVNYECNICKKSFRQCTHFKTHMNSHTGEKPYLCTICGKSFTASGTLKVHTRIHTGETPFVCSHCNKGYNNSSSLKRHIMRNHTGEKPHVCMICHKGFHDSTNLKRHIKRVHSVVEIKKDNDVITMNNAAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01290586; iTF_01296705; iTF_00887108; iTF_00886689; iTF_01370660;
- 90% Identity
- iTF_01290586;
- 80% Identity
- iTF_01290586;