Lqua029751.1
Basic Information
- Insect
- Leptura quadrifasciata
- Gene Symbol
- -
- Assembly
- GCA_963675555.1
- Location
- OY776675.1:157533541-157536745[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.027 2.2e+03 1.0 1.3 5 45 223 263 219 274 0.83 2 9 3.2e-07 0.027 16.7 0.1 21 49 295 323 290 326 0.93 3 9 0.094 7.8e+03 -0.8 0.0 11 34 337 360 332 371 0.85 4 9 0.19 1.6e+04 -1.7 0.0 23 45 377 399 357 403 0.74 5 9 0.00049 41 6.5 0.0 21 44 403 426 395 433 0.90 6 9 0.018 1.5e+03 1.5 0.1 27 46 468 487 463 495 0.84 7 9 0.048 3.9e+03 0.2 0.1 21 43 490 512 486 517 0.81 8 9 0.0027 2.3e+02 4.2 0.1 11 48 507 545 502 547 0.82 9 9 5.4e-06 0.45 12.8 0.1 21 48 547 574 543 576 0.89
Sequence Information
- Coding Sequence
- ATGGAAATCGATAAAGCAAACGTTTCAATTCATGACTTCCCAAAAATATGTCGTCTGTGTTTATTTTCCAATGATTTGCTGCCTTTTATGCACCTGGAATtaataaaattgtacaaaaacaTGATTAATATTGAGATTATGGACGATGAcaaatttcccaaaaatatatgcAAAGCCTGTGTAAAAGAACTAGAAAATATTGCATCATTTATAGAAAAATGTAGAGATAATTACTCAATCCTTGCAGTAATCCTTGAACAGGAAAAAGATGGAAACTTTAGTCCTGTTTACGATGTAACAGGCAACATCTCTTTCTCAGATGATGATTCGCAGTCAGTTGAGGAAGCTGCAGTAAAGTTAGAAAATGGATCTGTTAAAGCAGAAAATGAAGAATCAGCAAAGAAAACGCAAAATGTATCTGAGGGAGATAACAATAGCATTAGATCGAAAAATTTCCAGTGCGCAAATTGCGGGAAAGGATTTTATACTAAAAGGGAGTTAGTTGTTCATATAAAAATACATTCCGACTCTAGACCATATCCTTGCCATGAGTGCAATATGGAGTTCAAATTCAGACAATCGTTGCAAAGGCACAGATTAATTCATAGCAGTATTAGGGCATATAAATGTGACGTATGTGGAAAAGgATTTAAAAGAGCATTTTCAAGGAACAAGCACAGAAGAGTCCATAGCAGAATTAAAATGCGCTCTGTCTCAGAAACCAAATATAACTGTACGCAGTGTGATAGAATCCTCACTTCACATTCGGCCTTAAGCAGTCACATGAAAACTCACACTGGCGAAAAACCATACTCCTGTTCGTATTGTGGAAAACGCTTTCCGTACGTCAGTAGTTTAACTGTGCACACTCGTTTACATACAGGGGAAACCCCTTTTATTTGCCCCATTTGCAATAAAGGCTATCGTAGTTCCACTAGTCTGAAAAAACATAGGGAAGTTAAACACTATGAAATTGAAGACATCAAAGTGGAGAGTGAGAACGAAAACGGACGGGAGAAGGCCGAGGATAATTCTAAAAATGCAGATAGACGTGAATGTAAAATCTGTAATAAAATTCTACACAAACACGGATTTGGTACTCACATGCGAATTCATACTGTGGAAAAGAAAAAATTCGTGTGTACGTTTTGCAATAAGAATTTCCAGAAAAATTCCCATCTTGAGAGGCACATACGAATTCACACAGGTGAGAGACCTTATATCTGCAAATTATGTAACAAAACCTTCAAGCAAGATGGCGATCTTAAGCGACACGTACTAATCCACACAGGCGAAAAACAATTTCAATGCCAACACTGCGGTAAACAGTATTACACTAAGGGATCCCTAGACACTCATATGGCCGTTCATACTGGTGTAAGAAGACCAGTGAATTACGAATGCAACATATGCAAGAAATCTTTCAGGCAATGTACTCACTTCAAAACGCACATGAATTCTCACACAGGCGAAAAGCCATATTTATGTACGATTTGCGGTAAATCATTCACAGCCAGTGGAACCTTAAAAGTACACACAAGAATCCACACAGGCGAGACACCATTTGTATGTTCACACTGCAATAAAGGGTACAATAATTCAAGCAGTTTGAAGAGGCACATTATGAGAAATCACACCGGAGAGAAGCCACATGTATGTATGATTTGCCACAAAGGTTTCCATGATTCGACGAACTTAAAAAGGCACATCAAACGAGTACACTCAGTCGTGGAAATCAAAAAAGACAATGATGCAGTAACGATAAGTGACACAGTTTTATAA
- Protein Sequence
- MEIDKANVSIHDFPKICRLCLFSNDLLPFMHLELIKLYKNMINIEIMDDDKFPKNICKACVKELENIASFIEKCRDNYSILAVILEQEKDGNFSPVYDVTGNISFSDDDSQSVEEAAVKLENGSVKAENEESAKKTQNVSEGDNNSIRSKNFQCANCGKGFYTKRELVVHIKIHSDSRPYPCHECNMEFKFRQSLQRHRLIHSSIRAYKCDVCGKGFKRAFSRNKHRRVHSRIKMRSVSETKYNCTQCDRILTSHSALSSHMKTHTGEKPYSCSYCGKRFPYVSSLTVHTRLHTGETPFICPICNKGYRSSTSLKKHREVKHYEIEDIKVESENENGREKAEDNSKNADRRECKICNKILHKHGFGTHMRIHTVEKKKFVCTFCNKNFQKNSHLERHIRIHTGERPYICKLCNKTFKQDGDLKRHVLIHTGEKQFQCQHCGKQYYTKGSLDTHMAVHTGVRRPVNYECNICKKSFRQCTHFKTHMNSHTGEKPYLCTICGKSFTASGTLKVHTRIHTGETPFVCSHCNKGYNNSSSLKRHIMRNHTGEKPHVCMICHKGFHDSTNLKRHIKRVHSVVEIKKDNDAVTISDTVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01291134;
- 90% Identity
- iTF_00886689;
- 80% Identity
- iTF_00886689;