Rbic015028.1
Basic Information
- Insect
- Rhamnusium bicolor
- Gene Symbol
- -
- Assembly
- GCA_029963845.1
- Location
- JANEYF010001281.1:1044528-1046846[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.1e-06 0.00043 22.6 0.1 1 23 159 181 159 181 0.98 2 14 0.0001 0.021 17.2 2.8 1 23 187 209 187 209 0.97 3 14 1e-05 0.0021 20.4 0.9 1 23 215 237 215 237 0.98 4 14 3e-05 0.0063 18.9 2.2 1 23 250 272 250 272 0.98 5 14 2.3e-06 0.00047 22.5 0.9 1 23 278 300 278 300 0.98 6 14 6.4e-06 0.0013 21.1 0.7 1 23 306 329 306 329 0.95 7 14 0.25 51 6.6 3.8 2 23 359 379 359 379 0.97 8 14 6.4e-06 0.0013 21.1 3.4 1 23 386 408 386 408 0.98 9 14 7.2e-06 0.0015 20.9 0.6 1 23 414 436 414 436 0.97 10 14 2e-05 0.0042 19.5 2.0 1 23 442 464 442 464 0.98 11 14 1.9e-05 0.0039 19.6 8.4 1 23 473 495 473 495 0.99 12 14 2.4e-06 0.00049 22.4 0.3 1 23 501 523 501 523 0.96 13 14 5.2e-05 0.011 18.2 1.4 1 23 529 552 529 552 0.97 14 14 8.2e-05 0.017 17.6 5.7 1 23 558 581 558 581 0.97
Sequence Information
- Coding Sequence
- atgGAATTCAATAAAGCAAACATTTCTATTGATGATTTTCCTAAAATATGTCATGTGTGTCTATTTCCCAATGAGTTGTTACCACTTATGCCATTAGAATTAATGAAGTTATATAGaaatataactaatattaagATTAATGAAGATGACAAATTTCTCACAAATGTATGTAAAGGTTGTATAAATGAACTAGAAAATATTGcatcttttatagaaaagtgTAAGAATAATTACTTAATTCTTACTGTAATCTTGGAGCAGGAAAAAGGTAGAATTGTTAGTCCTGGTTATGATGTACCAGACAATGTATCAGATATTGACGATTTACATTTGGCTGAAGAAGTTACAgtgaaaatagaaaatgaacAGGATTTTTGTTCGTCTAAAtctttaaaaactgaaaataaagtgGGACTATCAAAGAAGACACCACATAAATCTAAGAAAGATGACAATAATACCAAGGGAAAAAACTTTCAATGTGCAAATTGTGGGAAAGGATTTTATACTAAAGGAGAGCTAGTTGTTCACATAAGACTACATTCTGAATCTAGACCATTTTCTTGTCAAGAATGTAATATGCGGTTCAAATTTCGACAATCATTGCAAAGGCACAGATTAATACATAGTAGCATTAGGTCGTATATGTGTGATGTATGTGGAAAAGGATTTAAGAGAGCTTTTGAAAGAAATAAACACAGAAGAATACATAGTAGAGTTAAAATGCATTCAGCTGCAGAATCCAAATATAATTGTACACAGTGTGATAGAATTCTCACTTCACATTCTGCCTTAAACAGTCATATGAAAACTCATACAGGAGAAAAACCATACTCTTGTTCTTATTGTGGAAAACGTTTTCCCTACGTCAGTAGTTTAACTGTACATACTCGTTTACATACAGGGGAAACCCCATTTATCTGCCCCATTTGCAATAAGGGTTATCGTAGTTCAACTAGCCTAAAGAAACACAGAGAAGTTACACATTATGAAATTGAAGATATTAAAgagaatactgaaaataaagatGGTCATGAGAAAACCGaggaaaattctaaaaatatggataaacgagaatgtaaaatttgtaataaaatactcCACAAACATGGATTTGGCACTCATATGAGAATACATACTGTTGAAAAGAAGAAATTCGTCTGTacattttgcgaaaaaaatttccagaaaaattCACACCTTGAAAGACACATAAGAATACATACAGgtgAAAGGCCTTATGTATGCAAATTGTGCAACAAAACTTTTAAGCAAGATGGGGACCTTAAAAGACATGGACTGATCCATACTGGAGAGAAACAGTTCCAATGTCAACACTGCGGTAAACAATATTACACCAAGGGAACCCTAGACACTCACATGGCTGTTCATACTGGAATAAGAAGGCCAATTAACTATGAATGCAACATCTGCAAGAAGTCTTTCAGACAATGCACACACTTCAAGACCCACATGAATTCCCACACAGGAGAAAAACCTTATTTATGCACGATTTGTGGTAAATCATTCACAGCAAGTGGAACTTTAAAAGTTCATACGAGAATTCACACAGGTGAAACACCTTTTGTTTGCTCTCACTGTAATAAGGGGTTTCCCAGTTCAACCAGTTTAAAGGGACATGTTATGAGAAATCACACGGGAGAGAAACCACATGTGTGCATGATTTGTCATAAAGGTTTCCATGATTCtacaaatttaaagagacacatAAAACGAGTACATTCTGTGGTAGAAATTAAAAACGATAATGTAGTACTAACCGAACCGGCattgacataa
- Protein Sequence
- MEFNKANISIDDFPKICHVCLFPNELLPLMPLELMKLYRNITNIKINEDDKFLTNVCKGCINELENIASFIEKCKNNYLILTVILEQEKGRIVSPGYDVPDNVSDIDDLHLAEEVTVKIENEQDFCSSKSLKTENKVGLSKKTPHKSKKDDNNTKGKNFQCANCGKGFYTKGELVVHIRLHSESRPFSCQECNMRFKFRQSLQRHRLIHSSIRSYMCDVCGKGFKRAFERNKHRRIHSRVKMHSAAESKYNCTQCDRILTSHSALNSHMKTHTGEKPYSCSYCGKRFPYVSSLTVHTRLHTGETPFICPICNKGYRSSTSLKKHREVTHYEIEDIKENTENKDGHEKTEENSKNMDKRECKICNKILHKHGFGTHMRIHTVEKKKFVCTFCEKNFQKNSHLERHIRIHTGERPYVCKLCNKTFKQDGDLKRHGLIHTGEKQFQCQHCGKQYYTKGTLDTHMAVHTGIRRPINYECNICKKSFRQCTHFKTHMNSHTGEKPYLCTICGKSFTASGTLKVHTRIHTGETPFVCSHCNKGFPSSTSLKGHVMRNHTGEKPHVCMICHKGFHDSTNLKRHIKRVHSVVEIKNDNVVLTEPALT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01291134;
- 90% Identity
- -
- 80% Identity
- -