Basic Information

Insect: Leptura quadrifasciata
Gene Symbol: -
Assembly: GCA_963675555.1
Location: OY776675.1:157533541-157536745[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3.5e-06 0.00065 22.1 0.3 1 23 152 174 152 174 0.98

2 14 7.3e-05 0.014 18.0 2.8 1 23 180 202 180 202 0.98

3 14 5.7e-06 0.0011 21.4 1.7 1 23 208 230 208 230 0.99

4 14 8.9e-05 0.017 17.7 2.2 1 23 243 265 243 265 0.98

5 14 2.6e-06 0.00049 22.5 0.9 1 23 271 293 271 293 0.98

6 14 8.3e-06 0.0015 20.9 0.8 1 23 299 322 299 322 0.95

7 14 0.29 54 6.6 3.8 2 23 352 372 352 372 0.97

8 14 4.5e-06 0.00084 21.8 3.9 1 23 379 401 379 401 0.98

9 14 4.9e-06 0.00091 21.6 0.7 1 23 407 429 407 429 0.97

10 14 1.6e-05 0.0029 20.1 1.9 1 23 435 457 435 457 0.98

11 14 2.2e-05 0.0041 19.6 8.4 1 23 466 488 466 488 0.99

12 14 2.8e-06 0.00051 22.4 0.3 1 23 494 516 494 516 0.96

13 14 1.8e-06 0.00033 23.1 3.0 1 23 522 545 522 545 0.97

14 14 9.5e-05 0.018 17.6 5.7 1 23 551 574 551 574 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3.5e-06	0.00065	22.1	0.3	1	23	152	174	152	174	0.98
2	14	7.3e-05	0.014	18.0	2.8	1	23	180	202	180	202	0.98
3	14	5.7e-06	0.0011	21.4	1.7	1	23	208	230	208	230	0.99
4	14	8.9e-05	0.017	17.7	2.2	1	23	243	265	243	265	0.98
5	14	2.6e-06	0.00049	22.5	0.9	1	23	271	293	271	293	0.98
6	14	8.3e-06	0.0015	20.9	0.8	1	23	299	322	299	322	0.95
7	14	0.29	54	6.6	3.8	2	23	352	372	352	372	0.97
8	14	4.5e-06	0.00084	21.8	3.9	1	23	379	401	379	401	0.98
9	14	4.9e-06	0.00091	21.6	0.7	1	23	407	429	407	429	0.97
10	14	1.6e-05	0.0029	20.1	1.9	1	23	435	457	435	457	0.98
11	14	2.2e-05	0.0041	19.6	8.4	1	23	466	488	466	488	0.99
12	14	2.8e-06	0.00051	22.4	0.3	1	23	494	516	494	516	0.96
13	14	1.8e-06	0.00033	23.1	3.0	1	23	522	545	522	545	0.97
14	14	9.5e-05	0.018	17.6	5.7	1	23	551	574	551	574	0.97

Sequence Information

Coding Sequence: ATGGAAATCGATAAAGCAAACGTTTCAATTCATGACTTCCCAAAAATATGTCGTCTGTGTTTATTTTCCAATGATTTGCTGCCTTTTATGCACCTGGAATtaataaaattgtacaaaaacaTGATTAATATTGAGATTATGGACGATGAcaaatttcccaaaaatatatgcAAAGCCTGTGTAAAAGAACTAGAAAATATTGCATCATTTATAGAAAAATGTAGAGATAATTACTCAATCCTTGCAGTAATCCTTGAACAGGAAAAAGATGGAAACTTTAGTCCTGTTTACGATGTAACAGGCAACATCTCTTTCTCAGATGATGATTCGCAGTCAGTTGAGGAAGCTGCAGTAAAGTTAGAAAATGGATCTGTTAAAGCAGAAAATGAAGAATCAGCAAAGAAAACGCAAAATGTATCTGAGGGAGATAACAATAGCATTAGATCGAAAAATTTCCAGTGCGCAAATTGCGGGAAAGGATTTTATACTAAAAGGGAGTTAGTTGTTCATATAAAAATACATTCCGACTCTAGACCATATCCTTGCCATGAGTGCAATATGGAGTTCAAATTCAGACAATCGTTGCAAAGGCACAGATTAATTCATAGCAGTATTAGGGCATATAAATGTGACGTATGTGGAAAAGgATTTAAAAGAGCATTTTCAAGGAACAAGCACAGAAGAGTCCATAGCAGAATTAAAATGCGCTCTGTCTCAGAAACCAAATATAACTGTACGCAGTGTGATAGAATCCTCACTTCACATTCGGCCTTAAGCAGTCACATGAAAACTCACACTGGCGAAAAACCATACTCCTGTTCGTATTGTGGAAAACGCTTTCCGTACGTCAGTAGTTTAACTGTGCACACTCGTTTACATACAGGGGAAACCCCTTTTATTTGCCCCATTTGCAATAAAGGCTATCGTAGTTCCACTAGTCTGAAAAAACATAGGGAAGTTAAACACTATGAAATTGAAGACATCAAAGTGGAGAGTGAGAACGAAAACGGACGGGAGAAGGCCGAGGATAATTCTAAAAATGCAGATAGACGTGAATGTAAAATCTGTAATAAAATTCTACACAAACACGGATTTGGTACTCACATGCGAATTCATACTGTGGAAAAGAAAAAATTCGTGTGTACGTTTTGCAATAAGAATTTCCAGAAAAATTCCCATCTTGAGAGGCACATACGAATTCACACAGGTGAGAGACCTTATATCTGCAAATTATGTAACAAAACCTTCAAGCAAGATGGCGATCTTAAGCGACACGTACTAATCCACACAGGCGAAAAACAATTTCAATGCCAACACTGCGGTAAACAGTATTACACTAAGGGATCCCTAGACACTCATATGGCCGTTCATACTGGTGTAAGAAGACCAGTGAATTACGAATGCAACATATGCAAGAAATCTTTCAGGCAATGTACTCACTTCAAAACGCACATGAATTCTCACACAGGCGAAAAGCCATATTTATGTACGATTTGCGGTAAATCATTCACAGCCAGTGGAACCTTAAAAGTACACACAAGAATCCACACAGGCGAGACACCATTTGTATGTTCACACTGCAATAAAGGGTACAATAATTCAAGCAGTTTGAAGAGGCACATTATGAGAAATCACACCGGAGAGAAGCCACATGTATGTATGATTTGCCACAAAGGTTTCCATGATTCGACGAACTTAAAAAGGCACATCAAACGAGTACACTCAGTCGTGGAAATCAAAAAAGACAATGATGCAGTAACGATAAGTGACACAGTTTTATAA
Protein Sequence: MEIDKANVSIHDFPKICRLCLFSNDLLPFMHLELIKLYKNMINIEIMDDDKFPKNICKACVKELENIASFIEKCRDNYSILAVILEQEKDGNFSPVYDVTGNISFSDDDSQSVEEAAVKLENGSVKAENEESAKKTQNVSEGDNNSIRSKNFQCANCGKGFYTKRELVVHIKIHSDSRPYPCHECNMEFKFRQSLQRHRLIHSSIRAYKCDVCGKGFKRAFSRNKHRRVHSRIKMRSVSETKYNCTQCDRILTSHSALSSHMKTHTGEKPYSCSYCGKRFPYVSSLTVHTRLHTGETPFICPICNKGYRSSTSLKKHREVKHYEIEDIKVESENENGREKAEDNSKNADRRECKICNKILHKHGFGTHMRIHTVEKKKFVCTFCNKNFQKNSHLERHIRIHTGERPYICKLCNKTFKQDGDLKRHVLIHTGEKQFQCQHCGKQYYTKGSLDTHMAVHTGVRRPVNYECNICKKSFRQCTHFKTHMNSHTGEKPYLCTICGKSFTASGTLKVHTRIHTGETPFVCSHCNKGYNNSSSLKRHIMRNHTGEKPHVCMICHKGFHDSTNLKRHIKRVHSVVEIKKDNDAVTISDTVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01291134;
90% Identity: iTF_00887108;
80% Identity: iTF_00887108;