Basic Information

Insect: Rhagium mordax
Gene Symbol: -
Assembly: GCA_963680705.1
Location: OY796659.1:79201108-79203116[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 2.5e-05 0.0029 19.8 1.0 1 23 149 171 149 171 0.97

2 14 0.0002 0.022 17.0 5.1 1 23 177 199 177 199 0.98

3 14 7.9e-06 0.0009 21.4 1.7 1 23 205 227 205 227 0.99

4 14 7.2e-05 0.0082 18.3 2.2 1 23 240 262 240 262 0.99

5 14 3.4e-06 0.00039 22.5 0.9 1 23 268 290 268 290 0.98

6 14 1.1e-05 0.0012 20.9 0.8 1 23 296 319 296 319 0.95

7 14 0.32 36 6.9 4.4 2 23 349 369 349 369 0.97

8 14 2.8e-06 0.00032 22.8 3.4 1 23 376 398 376 398 0.98

9 14 3.5e-06 0.0004 22.5 0.7 1 23 404 426 404 426 0.98

10 14 2e-05 0.0023 20.1 1.9 1 23 432 454 432 454 0.98

11 14 2.9e-05 0.0033 19.6 8.4 1 23 463 485 463 485 0.99

12 14 3.6e-06 0.00041 22.4 0.3 1 23 491 513 491 513 0.96

13 14 2.3e-06 0.00026 23.1 3.0 1 23 519 542 519 542 0.97

14 14 0.00012 0.014 17.6 5.7 1 23 548 571 548 571 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	2.5e-05	0.0029	19.8	1.0	1	23	149	171	149	171	0.97
2	14	0.0002	0.022	17.0	5.1	1	23	177	199	177	199	0.98
3	14	7.9e-06	0.0009	21.4	1.7	1	23	205	227	205	227	0.99
4	14	7.2e-05	0.0082	18.3	2.2	1	23	240	262	240	262	0.99
5	14	3.4e-06	0.00039	22.5	0.9	1	23	268	290	268	290	0.98
6	14	1.1e-05	0.0012	20.9	0.8	1	23	296	319	296	319	0.95
7	14	0.32	36	6.9	4.4	2	23	349	369	349	369	0.97
8	14	2.8e-06	0.00032	22.8	3.4	1	23	376	398	376	398	0.98
9	14	3.5e-06	0.0004	22.5	0.7	1	23	404	426	404	426	0.98
10	14	2e-05	0.0023	20.1	1.9	1	23	432	454	432	454	0.98
11	14	2.9e-05	0.0033	19.6	8.4	1	23	463	485	463	485	0.99
12	14	3.6e-06	0.00041	22.4	0.3	1	23	491	513	491	513	0.96
13	14	2.3e-06	0.00026	23.1	3.0	1	23	519	542	519	542	0.97
14	14	0.00012	0.014	17.6	5.7	1	23	548	571	548	571	0.97

Sequence Information

Coding Sequence: ATGGAAGTAAACAAAGCAAATACTATTTCTATTAATgactttccaaaaatatgtcACGTGTGTTTATTTCCTAATGATTTGCTGCCAGTTATGCCCCTGGATTTagtagaattttataaaactataataaaCGTTAAGATTATTGTGGATGATCAATTTCCCAAAAATATATGTAAGGGCTGTGTAAGGGAACTAGAAAATATTGCTTCGTTTATAGAGAAATGTAAGGATAATTATTCTATTCTCACAGTAATCCTAGAACAAGAAAAAGATAGAAAGTTTAATACCGTCTATGACGCACCAGACAATGTGTCATTGTCAGACGATGAATTTCATTCAATCGACGGAACCGCCCTGAAAATTGAAAACGGTTCCTGTGTATCTGAATCTATAAAAGTTGAAACTAAATCTGAAGATGAAAGTAACAGTACCAgggcaaaaaattttcattgtgCAAATTGTGGAAAAggattttataccaaaagagaGTTGGTTGTTCATATAAAAATACATTCCGATTCTAGACCTTTTTCTTGTCACGATTGCAATATGAAGTTCAAATTTCGACAATCTTTGCAGAGGCACCGATTAATTCATAGTAGTATTAGAGCATATAAGTGTGACGTATGCGGAAAAGGATTTAAAAGAGCTTTCTCAAGGAACAAACACAGGAGAATTCATAACAGAGTCAAAATGAATTCGTCATTGGAGTCTAAATATAGCTGCACACAGTGTGATCGAATTCTCACTTCACATTCTGCCCTAAGCAGTCATATGAAAACTCATACGGGCGAAAAACCATACTCTTGTTCTTATTGTGGCAAACGCTTTCCCTATGTCAGCAGTTTAACTGTCCATACTCGTTTACATACAGGGGAAACCCCTTTTATTTGCCCCATTTGCAATAAAGGCTATCGTAGTTCAACTAGTCTGAAAAAGCACAGAGAAGTCAAACATTATGAAATCGGAGACATTAAAGAGGAAAGAGAAAATGAAGACGATCAGCTAAAGACTGAAGACGACTCGAAAAATACAGATAGACGTGaatgtaaaatttgtaataaaatgcttCACAAACATGGATTTGGCACTCACATGAGAATTCACACTGTAGAGAAGAAGAAATTCGTATGCACGTTTTGCGATAagaattttcagaaaaattccCATCTTGAAAGGCACATAAGAATACATACAGGTGAGAGACCATATGTTTGCAAATTATGCAACAAAACCTTTAAACAAGATGGAGACTTGAAGCGACATGTACTGATCCACACCGGCGAAAAACAATTTCAATGCCAACACTGCGGTAAACAATATTACACTAAGGGGTCTCTAGATACCCACATGGCTGTTCATACTGGAGCGAGAAGGCCTGTTAACTATGAATGCAACATCTGCAAAAAGTCTTTTAGACAATGCACACATTTCAAAACGCATATGAATTCCCACACAGGTGAAAAACCTTATTTGTGCACAATCTGTGGTAAATCGTTCACAGCAAGTGGAACCTTAAAAGTACATACAAGGATTCACACAGGTGAAACGCCTTTCGTTTGTTCACACTGCAATAAAGGTTATAACAATTCTAGCAGCTTAAAGAGGCACATCATGAGAAATCATACTGGGGAAAAGCCGCATGTATGTATGATCTGCCACAAAGGTTTCCATGACTCTACGAATTTAAAAAGGCACATAAAACGAGTACATTCCGTAGTGGAAATCAAAAAAGATAATGACGTGATAACGATGAATAACGCTGCATTGTAG
Protein Sequence: MEVNKANTISINDFPKICHVCLFPNDLLPVMPLDLVEFYKTIINVKIIVDDQFPKNICKGCVRELENIASFIEKCKDNYSILTVILEQEKDRKFNTVYDAPDNVSLSDDEFHSIDGTALKIENGSCVSESIKVETKSEDESNSTRAKNFHCANCGKGFYTKRELVVHIKIHSDSRPFSCHDCNMKFKFRQSLQRHRLIHSSIRAYKCDVCGKGFKRAFSRNKHRRIHNRVKMNSSLESKYSCTQCDRILTSHSALSSHMKTHTGEKPYSCSYCGKRFPYVSSLTVHTRLHTGETPFICPICNKGYRSSTSLKKHREVKHYEIGDIKEERENEDDQLKTEDDSKNTDRRECKICNKMLHKHGFGTHMRIHTVEKKKFVCTFCDKNFQKNSHLERHIRIHTGERPYVCKLCNKTFKQDGDLKRHVLIHTGEKQFQCQHCGKQYYTKGSLDTHMAVHTGARRPVNYECNICKKSFRQCTHFKTHMNSHTGEKPYLCTICGKSFTASGTLKVHTRIHTGETPFVCSHCNKGYNNSSSLKRHIMRNHTGEKPHVCMICHKGFHDSTNLKRHIKRVHSVVEIKKDNDVITMNNAAL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01291134;
90% Identity: iTF_01291134;
80% Identity: iTF_01291134;