Smel041340.1
Basic Information
- Insect
- Stenurella melanura
- Gene Symbol
- -
- Assembly
- GCA_963583905.1
- Location
- OY757313.1:10009301-10016107[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.089 2.7e+03 0.8 0.6 13 45 240 272 226 281 0.77 2 7 5.1e-06 0.15 14.4 0.0 21 49 304 332 299 337 0.92 3 7 0.0015 46 6.5 0.0 21 44 414 437 406 444 0.90 4 7 0.056 1.7e+03 1.5 0.1 27 46 479 498 474 506 0.84 5 7 0.093 2.8e+03 0.8 0.0 21 43 501 523 493 527 0.78 6 7 0.0096 2.9e+02 3.9 0.1 11 48 518 556 512 558 0.82 7 7 1e-05 0.31 13.5 0.1 21 48 558 585 553 587 0.89
Sequence Information
- Coding Sequence
- atggaAATTGATAAATCAAATATTTCAATGCACGACTTTCCAAATATATGTCGTGTGTGTTTATTTTCCAGTGATCTGCTGCCATTTATGCCtaaggagttaataaaattatataaaagtatAATTAATATTGAGATTATGGAAGATGACAAATTTCCCAAAAGTATATGTACAGGCTGTGTAAAAGAACTAGAAAATATTGCATCTTTCatagaaaaatgtaaagataACTACTCCATTCTTACAGTAATCCTTGAACAGGAAAAAGATGGAAACTTTAGTCCTGTTTATGATGCACCAGATAATGTATCTTTATCAGACATCGATGATTCTCAATCAGTTGAAAAAACTGCAGTAAAAGTAGAAAAGAGTTCTCTTCCATCTGAACCTGTGAAAGTGGAAAATAAAGAGGGCCCATTAAAGAAAACACAAAAAGGTTCAGATACGGGAGATGACAATAACATTAGATCAAAAAATTTCCAGTGCGCAAATTGTGGGAAAGGATTTTACACTAAAAGGGAGTTGGTTGTTCATATAAAAGTACATTCCGACTCTAGACCGTTTTCTTGTCAAGAGTGTGATATGGAGTTCAAATTTCGACAATCCTTACAGAGACATAGATTAACTCACAGTAGTATTAGGGCATATAAATGTGACATATGTGGAAAAGGATTTAAGAGAGCTTTCTCAAGGAACAAACACAGGAGAGTGGTTCATAACAGAGTTAAGATGCGTTCAACATCAGAAACTAAATATAACTGTACTCAGTGTGATAGAATCCTCTCTTCACATTCCGCCTTAAGCAGTCATATGAAAACTCATACTGGTGAGAAACCATATTCATGTGCATATTGCGGAAAACGCTTTCCCTATGTCAGTAGTTTAACTGTGCATACTCGTTTACATACAGGGGAAACCCCTTTTATTTGCCCCATTTGCAATAAGGGCTATCGTAGTACAACTAGTCTGAAAAAACATAGAGAAGTGAAACATTATGAGATTGAAGATGTTAAAGTCGAGGGTGAGAATGAGAATGAGGAGAGTCAAGAGAAGACCGACAGGAATTCTAAAGATAGAGATAAACGTGAATGTAAGATTTGCAATAAAATACTTCACAAACATGGATTTGGTACTCACATGCGAATTCATACTGTAGAAAAGAAGAAATTTGAATGTACATTTTGtgataagcatttccaaaaaaattcgCATCTTGAAAGGCATATACGAATACACACAGGTGAGAGGCCTTATATCTGCAAATTATGCAACAAAACGTTCAAGCAAGATGGAGACCTTAAGAGACATGTACTGATCCACACAGGTGAAAAACAATTTCAGTGTCAACACTGCGGTAAACAGTATTACACTAAGGGATCCCTAGATACTCACTTGGCCGTCCATACTGGTGTAAGAACACCAGTAAATTATGAATGCAACATATGCAAGAAGTCTTTTAGACAATGTACTCACTTCAAAACACACATGAATTCGCACTCAGGCGAAAAACCATATTTATGTACCATTTGTGGTAAATCTTTCACAGCTAGTGGAACGTTAAAAGTACATACGAGAATCCACACAGGTGAGACACCGTATATATGTTCACACTGTAATAAGGGGTACAATAATTCAAGTAGTTTAAAGAGGCATATTATGAGGAATCACACTGGAGAGAAACCACATGTTTGTACGATTTGCCACAAAGGTTTTCATGACTCTACAAATTTAAAGAGACACATTAAACGAGTACACTCTGTCATAGACATCAACAAAgataataatgaagtggtggtgatTAACGATACAGCATATTTGTATTATAAATAG
- Protein Sequence
- MEIDKSNISMHDFPNICRVCLFSSDLLPFMPKELIKLYKSIINIEIMEDDKFPKSICTGCVKELENIASFIEKCKDNYSILTVILEQEKDGNFSPVYDAPDNVSLSDIDDSQSVEKTAVKVEKSSLPSEPVKVENKEGPLKKTQKGSDTGDDNNIRSKNFQCANCGKGFYTKRELVVHIKVHSDSRPFSCQECDMEFKFRQSLQRHRLTHSSIRAYKCDICGKGFKRAFSRNKHRRVVHNRVKMRSTSETKYNCTQCDRILSSHSALSSHMKTHTGEKPYSCAYCGKRFPYVSSLTVHTRLHTGETPFICPICNKGYRSTTSLKKHREVKHYEIEDVKVEGENENEESQEKTDRNSKDRDKRECKICNKILHKHGFGTHMRIHTVEKKKFECTFCDKHFQKNSHLERHIRIHTGERPYICKLCNKTFKQDGDLKRHVLIHTGEKQFQCQHCGKQYYTKGSLDTHLAVHTGVRTPVNYECNICKKSFRQCTHFKTHMNSHSGEKPYLCTICGKSFTASGTLKVHTRIHTGETPYICSHCNKGYNNSSSLKRHIMRNHTGEKPHVCTICHKGFHDSTNLKRHIKRVHSVIDINKDNNEVVVINDTAYLYYK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01291134;
- 90% Identity
- -
- 80% Identity
- -