Basic Information

Insect: Pterostichus niger
Gene Symbol: Rreb1
Assembly: GCA_947425015.1
Location: OX380339.1:20858437-20863543[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00011 0.015 17.2 1.2 1 23 73 95 73 95 0.98

2 16 0.00028 0.039 15.9 0.3 1 23 107 129 107 129 0.98

3 16 5.2e-06 0.00074 21.3 4.0 1 23 135 157 135 157 0.99

4 16 1.9 2.6e+02 3.9 0.1 1 23 237 261 237 261 0.88

5 16 0.033 4.6 9.4 1.3 2 23 267 289 266 289 0.94

6 16 0.21 29 6.9 0.3 1 20 339 358 339 360 0.94

7 16 0.1 14 7.8 0.1 1 23 497 519 497 519 0.96

8 16 9.3e-06 0.0013 20.5 0.7 1 23 529 551 529 551 0.99

9 16 0.0012 0.17 13.9 3.1 1 23 557 580 557 580 0.97

10 16 0.001 0.14 14.1 2.8 1 23 977 1000 977 1000 0.96

11 16 0.0015 0.22 13.6 1.4 2 23 1274 1295 1273 1295 0.97

12 16 0.13 18 7.5 4.2 1 23 1301 1324 1301 1324 0.96

13 16 0.15 22 7.3 4.0 1 20 1357 1377 1357 1381 0.94

14 16 1.1 1.6e+02 4.6 0.4 1 23 1452 1475 1452 1475 0.94

15 16 0.023 3.3 9.9 0.5 3 23 1525 1545 1523 1545 0.93

16 16 0.0041 0.58 12.2 5.5 1 23 1551 1573 1551 1573 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00011	0.015	17.2	1.2	1	23	73	95	73	95	0.98
2	16	0.00028	0.039	15.9	0.3	1	23	107	129	107	129	0.98
3	16	5.2e-06	0.00074	21.3	4.0	1	23	135	157	135	157	0.99
4	16	1.9	2.6e+02	3.9	0.1	1	23	237	261	237	261	0.88
5	16	0.033	4.6	9.4	1.3	2	23	267	289	266	289	0.94
6	16	0.21	29	6.9	0.3	1	20	339	358	339	360	0.94
7	16	0.1	14	7.8	0.1	1	23	497	519	497	519	0.96
8	16	9.3e-06	0.0013	20.5	0.7	1	23	529	551	529	551	0.99
9	16	0.0012	0.17	13.9	3.1	1	23	557	580	557	580	0.97
10	16	0.001	0.14	14.1	2.8	1	23	977	1000	977	1000	0.96
11	16	0.0015	0.22	13.6	1.4	2	23	1274	1295	1273	1295	0.97
12	16	0.13	18	7.5	4.2	1	23	1301	1324	1301	1324	0.96
13	16	0.15	22	7.3	4.0	1	20	1357	1377	1357	1381	0.94
14	16	1.1	1.6e+02	4.6	0.4	1	23	1452	1475	1452	1475	0.94
15	16	0.023	3.3	9.9	0.5	3	23	1525	1545	1523	1545	0.93
16	16	0.0041	0.58	12.2	5.5	1	23	1551	1573	1551	1573	0.98

Sequence Information

Coding Sequence: ATGGATGATTCGCTCAATAATACCAAAGATAGCCAAAGAAAAACCGACGCAGAAGAAAGCATGTTGGAAAGCAGTTCCGCTTTATCCGATAACCTTCAGGATACGATATCGAACCACGACTCTGATGTGGAGCCCATGGACATTAGCAATAAAACAACGACAACCGTAGACAGCGACAATCAGAGCGACTGCAGTTCTCCGAGCAACCCCACCAAGTACTTCTGCCCAATCTGCGACATCACCCTTACTTCTCAACATGAGTTCACGTTGCACATTCGCTCTCATAACAACGACAACGAAATTATCTCCGAAAAAGGCTTCACCTGTCGAATTTGCTCAAAAGTGCTGAGTTCCAGCTCGAGTTTGGATAGGCACGTCCTTGTTCACAGCGGCGAACGACCTTTTCGCTGTAAAATCTGTTCTGTGACTTTTACAACAAACGGAAATATGCATCGACATATGCGGACTCATTCGCAAAAAACTGGAGAAAATTATGAATCTGACGCCAGTACCGATAGTAACGCTAGTGTCAATTCAAATGGAAAAACGAGAAAACGAAGACTAGAATTTAACAATAACAAGTTAGTAGATAATAGCAATAAAAGAAAATCAGACTGTTTTGCTAATGAAGATGATGATAATTACATGCATCGTAGAAAATCAAAAAACTTTAATAACAACAATATTAATGAAATGAATACACAGAAATATCATTGTCCTGTTTGTGACAGGGAAGATTTTGCTTCTTTAAATGTCTTAGAAACACATCTTGAAGTCAACCACCCCGACTTTGAAGTTAAGTGTGTGTCTTGTAATTTGAGCTTCAAAAATCACCGTGCCTTAAATCTGCATCGAGATATGGTTCACCTTCATAATATTAACAATAAAAATATTAAAAACGCCCACATTGGATTTAAAGATTTGACTTTTGTTGATTTCTCGAGTAATAAATTTCCACATATTGCTCGTTATGAATGTGAGAAAAATTTACATAAACCAGTAACAGGTCAAAAATTTATTTGCGAAAAATGTTCAAGAGCATTCCCGTGTTCCAGTGCATTGGAGATGCACCAAGATGAATGTCTAAAGAATAAATTTGTGACAAAAGAAACCGATTATCCGACAGATTTGTCTCGGAGAACAGCAACTGAGGAAGATATGCAACGAGAAAACTTTTTTGCACGATTAGATTTACAAAACAAATCAGGCTCTACTTCACCAGTTTCTCCAGCAGTAAGCGAAGAACCAAAAATACAAGACAATCGACCTCAATCAAAATCGGCAATGGATTCCAAAGATTTGGCTGATATTCAATCAATTCTATCCATGACGTCAAATGGAAGTTTGCTACAGCATTTACGAACTAAACCATCTTCTGAGCTATTATCATTACCAACAGAAAATTTAAGAATTCCAGAGCAACATAATGAGGAGGAAACTCAAGATGTCTTTGCCGCGGAATTTAGAAAAATGAAATTACGGGGCGAATTTCCCTGCCGACTTTGCACTGCTGTATTTCCTAATCTTCGGGCGTTAAAGGGTCATAATCGTGCCCACTTGACTGGAAGTGGTAATTCAGGGCCATATCGATGCAACATGTGCCCACATAGCTCTGTTGACAAAGCTGCTCTGATTCGACATATGCGGACACACAATGGCGACAGACCTTACGAATGTTCACTGTGTAACTATGCTTTCACCACAAAAGCTAATTGCGAAAGGCATTTGAGAAACAGGCATTCTAAAGTTACCAGAGAAGAAGTTAAAAAGTCTATCATTTATCATCCATCGGAAGATCCAACGAATGACGAAATCAATAAAATCAGCTCGTCTCGAAATGAAATGAAACCTAATTTTTTAAATACCTCAAATGATGATGATTTACATATTAATGATAGAAGCAATAGTTCTACATCTATTCCAGATCATAAAAATATTGCTATCCCGGGAATTACAATACCTACAGCGATAATTAATAAAGGGTTAGCAATTAATCGACCAATAATAACTGATCATTCTTCAATAAATCATATTAGTAAAGATCTGGTTAGCCTAAAAGATCATAAAAACTCAACAAAAGAAGAGAAGACAGATTTTCATTATCCTAGACATGGATTCACATACAACTCTGATATATCTGAGAAAATCAAAGAAGACTTGATTCATTCTAAAATCCAAGTGAAAAATTTGAATGACTTGAGACAGATTCCTGATTATGACATTCACTCTGAAGAAGAAGAGTCAAGTAATAACTTATCATCTAGTTTTGATGAATATCCAAAATCATCTGGGGATCATCCTATGGATTTAAGCATGGATGTCTTAGATTTGAGTAAGAAAAAAGAATCTCCAACACCTAAAATAGACAACGAACCTCAAGATTTTACTAAAAAAACTTTAGAATCAACGTCAACTATACCTCCACCGCCAACAGCTGCTCAACTGCTTTTGGCTCAGCAGTTATTGAAACATCCATACATGAACCATTTATCGCAATTTTATCAGAACCCTGCTCTCTTTCCAAATTTACCAAACTTAAACTTGCAATCAAATCTATTTCCATTTCTATTTCCACCCCCTTTCTTGAATACTCAAGAAATGAAAGAAAGAATTGTTCGCTTACAGTTAAGTGGCGGAACAATGATAAGTGAACAGTTTCCATCTGTTGCTTCAAATGGTATGCAATCATTTCATCAAGATTTATCAAATATTTCTGATTTAAAATATTCAATGACAAAACCGGAAGAAGAGAAGCCACCTCTTCACATAAACACTCAACTCTCTGATAGTGTTACTAAATTGCAGTCTCCTAAACCGCAACAAAAAACACCAGATATGATTCATAGTCCAAATTCCGTAAAAATGGTTATAAAAAATGGAGTTTTAATGCCAAAGCAAAAGCAACGACGATACCGCACTGAACGGCCTTTTTCATGTGAACATTGTTCTGCAAGATTCACTTTAAGATCCAACATGGAGAGACATATAAAACAACAACATCCACAGTTTTGGTCACAAAGACAACGTGCAGGCATCAGTGGAGCTGGACGAAAACCTATCAGCGCACCTGCAACAAACATGCAAAATAGCACTAAACCACCGTTTTACGACTTAAACATTCCTAACTACGACATGCATATACCAAAGATGCAAGATTCTGTAGTCACTGAAGCCAAAGATAAAGATATGAATATCGCTCAGCATCATATACCAATTTCTCAACAAGTTAAATATGCGTTGTTAGCTCAACAGTTGAAAGCACGCAGTGTTGAGCACAATCATTTGCCACTTACAAAAGATCGTACTCCTCAAGATGATGATGAGGACGCATTAGTTATTGATGAAGAAAATGAAGATGAAAAACCTCCAAAATATGAAACCAAAGAAAATGCAACCGAAGTGAAAAGTGTGGATACTGATATTAAACCTAAATCTTTAGAAGAAAAAATGCTTGAATTACGTCAGATGCGCGAGAAAGAAATAAAAACTAACGAGAAAATGCAAATGAACATTGCTGATACTGGTTTATTGAAATTATCCAAATCTGAAGAAGCAGGACAAGATCTAGTACCAGTATCAAGGCTATTAGATAATGCAGTAAGCACGCAGTTGCCATTCCGAGAATATTTCCGCCGTGACGCGGAAGATAATGAAGCAGAAGGTGTCAGTGAAGAAGATGAAGAAGGATTAGTCGCAAGTGGCAGTACAAGTGAGGGAAATGGATCTGGCAGTGATGAAAATAAATCTGAAAATGAAACTGCAGCTACTAATGAACCTGGCAAGAAAAGATCTGCGTATTCCTTGGCTCCAAATCGTGTAAGCTGCCCTTATTGTCATCGTAAATTTCCATGGACTTCGTCGTTGAGACGTCATGTATTGACGCATACTGGTCAAAAACCCTTCAAGTGTTCTCAATGTCCACTATTATTTACCACGAAGTCAAACTGTGATCGACATTTACTTCGAAAACATGGAAACACCGTCAATTCCAATTCTGACTCATCAAATAATAATAATAATAACACTAATAGTCAGAATTATATGATGAGAAATGTTCCAGAAAGACCATACAAATGCTCAAGTTGCCCTAGCTCAACATTCTCTACTCTAAGTAATCTCAAAAAGCACATGTCCTGCAAGCATATGGCTAATTCTGCAATTGTAGATTCGCTTAAGAGCGATGAAGCTAGGTCACCCAGTAGAGAGTACGAGAGTATGGCAAGTTCCGAAGATGAACGAGTCACCAAACCATTAAACGACAGCAAAAATGACTGGGAAAATCAAATTTCCCATTCCAAAATTCTTATTCCTAATTCTGAACAATCTAGTGTGATACAAAATGCAGATTTGCCATTCAAGTGTCATTTGTGCGAAGGTTCATATGCGGAACGTCAAGATGCTTTAGATCACATACGAGATACGCACGTGTCTGAGTATGAACTGTTGATGGCGAAAGGTGCACTGGACGCGAATACTTCTGGGCACGAAGAAGCACACATGGCTGGCCACGACCCTGACGATGATGAACAGCTTCGTGGAAAATTCCCGGATTACGCAAACCGCAAAGTGATGTGCGCGTTTTGTATGCGCCGATTTTGGTCCGCCGAAGATCTGCGACGACACATGAGAACGCATACTGGAGAACGGCCATTTTCCTGCGATGTCTGCAACCGAAGATTTACTTTGAAGCACAGCATGCTACGACATCGAAAAAAGCACAACATAGCAGCGAGCTCATTAGAGGATGGTGTTCTGGCTAGTGGCGATGAAGAAGCAAATCCTGCACAATTACCGTATGACAAATTTACTAAATTAAATAATAATAACCTGGTACCCGGCAACAGTGCAAGAGATAAATCAGCAGAAAAATCTAGTGGCGAAGATTCGGAAGGGACCGAAGGAAATGATTTGATTGGAAATTTGCTTGGAATTAGAGATAAATCAATTATTGACCAAGTATTAGTTTCATCTGCTGATGATGCTGCTAAATTATTGGGTGTGAATAGTGGTCAAGAATAA
Protein Sequence: MDDSLNNTKDSQRKTDAEESMLESSSALSDNLQDTISNHDSDVEPMDISNKTTTTVDSDNQSDCSSPSNPTKYFCPICDITLTSQHEFTLHIRSHNNDNEIISEKGFTCRICSKVLSSSSSLDRHVLVHSGERPFRCKICSVTFTTNGNMHRHMRTHSQKTGENYESDASTDSNASVNSNGKTRKRRLEFNNNKLVDNSNKRKSDCFANEDDDNYMHRRKSKNFNNNNINEMNTQKYHCPVCDREDFASLNVLETHLEVNHPDFEVKCVSCNLSFKNHRALNLHRDMVHLHNINNKNIKNAHIGFKDLTFVDFSSNKFPHIARYECEKNLHKPVTGQKFICEKCSRAFPCSSALEMHQDECLKNKFVTKETDYPTDLSRRTATEEDMQRENFFARLDLQNKSGSTSPVSPAVSEEPKIQDNRPQSKSAMDSKDLADIQSILSMTSNGSLLQHLRTKPSSELLSLPTENLRIPEQHNEEETQDVFAAEFRKMKLRGEFPCRLCTAVFPNLRALKGHNRAHLTGSGNSGPYRCNMCPHSSVDKAALIRHMRTHNGDRPYECSLCNYAFTTKANCERHLRNRHSKVTREEVKKSIIYHPSEDPTNDEINKISSSRNEMKPNFLNTSNDDDLHINDRSNSSTSIPDHKNIAIPGITIPTAIINKGLAINRPIITDHSSINHISKDLVSLKDHKNSTKEEKTDFHYPRHGFTYNSDISEKIKEDLIHSKIQVKNLNDLRQIPDYDIHSEEEESSNNLSSSFDEYPKSSGDHPMDLSMDVLDLSKKKESPTPKIDNEPQDFTKKTLESTSTIPPPPTAAQLLLAQQLLKHPYMNHLSQFYQNPALFPNLPNLNLQSNLFPFLFPPPFLNTQEMKERIVRLQLSGGTMISEQFPSVASNGMQSFHQDLSNISDLKYSMTKPEEEKPPLHINTQLSDSVTKLQSPKPQQKTPDMIHSPNSVKMVIKNGVLMPKQKQRRYRTERPFSCEHCSARFTLRSNMERHIKQQHPQFWSQRQRAGISGAGRKPISAPATNMQNSTKPPFYDLNIPNYDMHIPKMQDSVVTEAKDKDMNIAQHHIPISQQVKYALLAQQLKARSVEHNHLPLTKDRTPQDDDEDALVIDEENEDEKPPKYETKENATEVKSVDTDIKPKSLEEKMLELRQMREKEIKTNEKMQMNIADTGLLKLSKSEEAGQDLVPVSRLLDNAVSTQLPFREYFRRDAEDNEAEGVSEEDEEGLVASGSTSEGNGSGSDENKSENETAATNEPGKKRSAYSLAPNRVSCPYCHRKFPWTSSLRRHVLTHTGQKPFKCSQCPLLFTTKSNCDRHLLRKHGNTVNSNSDSSNNNNNNTNSQNYMMRNVPERPYKCSSCPSSTFSTLSNLKKHMSCKHMANSAIVDSLKSDEARSPSREYESMASSEDERVTKPLNDSKNDWENQISHSKILIPNSEQSSVIQNADLPFKCHLCEGSYAERQDALDHIRDTHVSEYELLMAKGALDANTSGHEEAHMAGHDPDDDEQLRGKFPDYANRKVMCAFCMRRFWSAEDLRRHMRTHTGERPFSCDVCNRRFTLKHSMLRHRKKHNIAASSLEDGVLASGDEEANPAQLPYDKFTKLNNNNLVPGNSARDKSAEKSSGEDSEGTEGNDLIGNLLGIRDKSIIDQVLVSSADDAAKLLGVNSGQE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00767529; iTF_01105034; iTF_00029611; iTF_01226101; iTF_00769110; iTF_00470296;
90% Identity: -
80% Identity: -