Basic Information

Insect: Harpalus rubripes
Gene Symbol: RREB1
Assembly: GCA_963082715.1
Location: OY720457.1:9075364-9093533[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00011 0.027 17.2 1.2 1 23 103 125 103 125 0.98

2 15 0.0002 0.05 16.3 0.3 1 23 137 159 137 159 0.98

3 15 5e-06 0.0013 21.3 4.0 1 23 165 187 165 187 0.99

4 15 0.085 21 8.0 2.9 2 23 296 318 295 319 0.94

5 15 0.2 51 6.9 0.3 1 20 372 391 372 393 0.94

6 15 0.099 25 7.8 0.1 1 23 526 548 526 548 0.96

7 15 4.3e-06 0.0011 21.5 1.2 1 23 558 580 558 580 0.99

8 15 0.0011 0.29 13.9 3.1 1 23 586 609 586 609 0.97

9 15 0.00097 0.25 14.1 2.8 1 23 994 1017 994 1017 0.96

10 15 0.0015 0.37 13.6 1.4 2 23 1284 1305 1283 1305 0.97

11 15 0.12 31 7.5 4.2 1 23 1311 1334 1311 1334 0.96

12 15 0.15 37 7.3 4.0 1 20 1365 1385 1365 1389 0.94

13 15 0.19 48 6.9 0.4 1 23 1456 1479 1456 1479 0.95

14 15 0.022 5.7 9.9 0.5 3 23 1529 1549 1527 1549 0.93

15 15 0.01 2.6 10.9 5.5 1 23 1555 1577 1555 1577 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00011	0.027	17.2	1.2	1	23	103	125	103	125	0.98
2	15	0.0002	0.05	16.3	0.3	1	23	137	159	137	159	0.98
3	15	5e-06	0.0013	21.3	4.0	1	23	165	187	165	187	0.99
4	15	0.085	21	8.0	2.9	2	23	296	318	295	319	0.94
5	15	0.2	51	6.9	0.3	1	20	372	391	372	393	0.94
6	15	0.099	25	7.8	0.1	1	23	526	548	526	548	0.96
7	15	4.3e-06	0.0011	21.5	1.2	1	23	558	580	558	580	0.99
8	15	0.0011	0.29	13.9	3.1	1	23	586	609	586	609	0.97
9	15	0.00097	0.25	14.1	2.8	1	23	994	1017	994	1017	0.96
10	15	0.0015	0.37	13.6	1.4	2	23	1284	1305	1283	1305	0.97
11	15	0.12	31	7.5	4.2	1	23	1311	1334	1311	1334	0.96
12	15	0.15	37	7.3	4.0	1	20	1365	1385	1365	1389	0.94
13	15	0.19	48	6.9	0.4	1	23	1456	1479	1456	1479	0.95
14	15	0.022	5.7	9.9	0.5	3	23	1529	1549	1527	1549	0.93
15	15	0.01	2.6	10.9	5.5	1	23	1555	1577	1555	1577	0.98

Sequence Information

Coding Sequence: ATGCGTGGCACTGCATCTCCAAGCTCCACTCCACCAGGCCCCGGCCCACATGCCAACTCGCCGCAACCCGCATCGCCTGCCGttaTCAACATGGATGATTCGCTCAACAGTACCAAAGAAAGCCAAAGAAAAAACGAAACAGAGGACAGCATGCTGGAAAGCAGTTCTGCTGTGTCTGACAACCTCCATGATACCATTTCTACCCATGACTCTGACGTAGAGCCTATGGACATCAGCAATAAGACAACGACAACCGTAGACAGCGATAATCAAAGCGACTGCAGTTCTCCCAGCAACCCAACGAAGTACTTCTGTCCAATTTGCGATATCACACTCACTTCTCAACACGAATTTACCCTCCACATTCGCTCTCATAACAACGACAATGAAATAGTATCAGATAAGGGCTACACGTGTCGAATTTGCTCAAAAGTGCTGAGTTCTAGTTCTAGTTTAGACAGGCACGTACTTGTTCATAGTGGGGAACGACCCTTTCGTTGTAAAATCTGTTCTGTTACTTTTACCACAAATGGAAATATGCACAGGCACATGCGGACTCATTCGCAAAAAGCTGGAGAGAACTATGAATCTGATGCAAGTACCGATAGTAATACTAGTGTTAATTCTAACGGAAAATCTAGAAAACGTAGattagaatttaataataacaaattagtAGACAACAGCAATAAAAGAAAATCTGACTGTTTTATTAACGAAGAAGATGACAACTACATGCATCGAAGAAAATCAAAAaactttaacaataataataatattagtgaAACACAAAAATACCACTGTCCTGTATGCGATAGGGACAACTTTGCCTCTTTAAATGTTCTAGAAACTCATCTTGAAGACCACCATCCAGACTTTGAAGTTAAATGTGTATCCTGCAATCTCAGCTTCAAAAACCACCGTGCCTTAAATCTTCACAGAGATATGGTGCACCATACTGAACAACAACATAACATcaacaataaaaacattaaaaacgcTCATATCGGTTTTAACGATTTGACGTTCGTTGATTTCTCTAGTAATAAATTTGCACAAATTGCCAGGTTTGAATGTGAAAGAAATTTACATAAACCTATAACAGGACAAAAgtttatttgtgaaaaatgttcGAGAGCTTTTCCATGTTCTAGTGCGTTAGAAATGCATCAAGATGAGTGCtgcaaaaataaacatacaagaGAAACTGATTATCCAACAGATTTATCAAGAAAATCAGACGACATGCAAAGAGAAAACTTTTTTGCTCGTTTGGATTTGCAAAACAAATCTGGAAGCATTTCTCCAGTTTCTCCAGTTGTTGTCGAAGAACCAAAAATTCCAGAAAGTCGACCGCAAATCAAACCTACTTCTGACTCCAAAGATTTGGCTGATATTCAGTCTATTTTATCCATGACATCCAATGGAAGTTTGCTACAACATTTACGAACGAAACCACCAACTGAATTATTACAATTACCAACAGAAACTTCCAGAAATTCAGAGCAACATAATGAAGAAGAAACTCAAGATGCATTTGCTGCAGAGTTTAGAAAAATGAAACTAAGAGGTGAATTCCCTTGCCGATTATGTACCGCAGTCTTTCCTAATCTCCGCGCATTAAAAGGCCACAATCGTGCGCATTTGACTGGTACGGGTAATTCTGGTCCATACCGATGTAATATGTGTCCGCATAGTTCTACGGACAAAGCTGCTCTCATTAGACACATGCGCACGCATAATGGCGACCGGCCTTACGAATGCTCTCTTTGTAATTATGCTTTTACTACCAAAGCAAATTGCGAAAGACATTTGAGGAATAGACACTCAAAAGTTACCAGAGAGGAAGTTAAGAAGTCTATTATTTATCATCCATCTGAAGATCCAACGAAtgatgaaattaataaaattaattcggctcgaaatgaaataaaacatagCTATCCCAGCATCTCGAATGAGGAAGATCTACGATCTAGAGAATCATTagaacataaaaatattgtcatACCTGGTCTCTCTATACCATCAACTTTAATTAATAAAGGATTAACTATAAACCGACCAATTGTTCCAGATCACCACTTAAACAAAGAATTACCTCCCGTAAAAGATCCAAAAGTATTACCAAAAGAAGATAAAATAGATTTCCCGTATCCTAAGAAACATACTTTCAACTATCCTCCCGATCTACctgacaaaatcaaagaaaactTGATCCATACAAAAATACAAGTCAAAAATCTGAACGatttgaaattgaaacaaatcCCAGACTACGAAATTCATTCCGATGAAGAAGAATCAAATACTAATATGTCTTCAAGTTTCGACGAATATCCCAAATCATCTGTTGAACACCCTATGGATTTAAGTATGGACGTATTAGATTTGAGTAAGAAAAAAGAATCTCCAAGTCCTAAAATTGATAACGAACCTCAAGATTTTACCAAAAAAACTTTAGAATCAACTCCAAATGTTCCGCCAACTCCTTCCGCAGCTCAGATGTTACTTGCGCAGCAATTTCTCAAGCATCCTTACATGACGCAATTATCACAATTCTACCAAAATCCTGCTCTATTtcctaatttaaatttacaacaaaatttatttccatttttctttcctccaccttttttaaacccccaAGAAGTAAAAGAGAGAATGCTTCGACTCCAATTAAGTGGAGGAACAATGATTAGTGAATTTCCACCTGTCCCGCCAAATGGAATACAATCTTTCAATCAAGACTTGCCAAATATTCCAGAAATGAAATACTCATTGGCAAAAGCAGAAGACGACAAGACTCCTCTTCATATAAACACACAATTGGCAGAAAATGTTAGCAAATTACATTCACCTAAACCACAACAAAAGACTCCTGATATGATTCATAGTccaaattctgtcaaaatggtTATTAAAAATGGAGTTCTAATGCCAAAACAAAAACAACGGAGGTATAGAACAGAAAGACCTTTCTCATGTGAACATTGCTCAGCAAGATTTACTCTAAGATCGAATATGGAACGACACATAAAACAACAACATCCACAGTTCTGGTCGCAAAGACAACGCGCTGGTTTAAGCGGAGCTGGAAGGAAACCTATAAGCGCAACTGCTACCAACATGCAGAACACCAAACCACCCTTTTACGACTTAAATATCCCTAACTATGACATGCACATACCAAAGATTCAAGACTCTTTAGTCACTGAAACCAAAGATAAAGACATAAACATTCAACATCATGTACCTATATCACAACATGTCAAATACGCTCTTCTAGCTCAACAATTGAAAGCTAGAAACATCGAAAACAATTCATTAATTAGTAAAGACCGCTTGCCTCAAGATGACGATGAGGATGCGTTAATAATCGACGAAGAAAATGATGAAGAAAAACCTAAACCTGAATCCAAAGAATCGACAGAAATAAGAATCGACGACAACAAACCAAAATCTCTGGAAGAGAAAATGTTAGAATTGCGCCAAATGcgtgaaaaagaaataaaaaacaacGAAAAATTACACTTGAATGTTTCGGAAACTggtttgttaaaattaataaagccTGAGGAAGCAGGACAAGATCTGGTACCAGTTTCTAGGCTTCTGGATAATGCAGTGAGTTCTCAGTTACCATTTCGAGAATATTTTCGCCGCGAAGGGGAAGACATTGAAGCAGAAGGTGTCAGCGAAGAAGATGAAGAAGGTTTAGTTGCTAGTGGCAGCACAAGCGAGGGAAATGGATCTGGAAGTGATGAAAATAAaTCTGAAAACGAAACTGCCACCACCAACGAACCCGGAAAGAAAAGATCTGCCTACTCTTTGGCGCCCAACCGAGTAAGTTGCCCTTACTGCCATCGCAAATTTCCATGGACTTCATCTCTCAGACGCCACGTCTTAACCCACACTGGACAGAAACCATTCAAATGTTCCCAATGTCCTCTCTTATTCACAACGAAATCAAACTGTGATCGGCATTTACTTCGAAAACACGGAAATGCCACAAACCCCCAATCTGAATCGTcaaataataacaacaacagtAGTCAGAATTATATGATGAGAAATGTTCCAGAAAGACCTTACAAGTGCTCAAGCTGCCCTAGTTCAACCTTTTCCACTTTGAGCAATCTCAAAAAACACATGTCTTGCAAACACACCATTGTGTCTTCAAGTGCGGATTCTTTGAAAGAAGATAACAGACCTCCTAGTAGAGAATATGAAAGTTTGGTTAGTTCTGAAGATGAACGAGTCAACAAAGACAACAAAAGTGATTGGGAGAATCAGATTTCACATTCCAAAATTCCAATTCCTAACAACGATCAGACAAACACGATACAAACAGCTGATTTGCCATTCAAATGCCATTTATGCGACAGTTCTTACGCAGAAAGACAAGACGCTTTAGATCACATTCGAGACGCTCATGTATCCGAATATGAATTGTTGATGGCAAAAGGCGCTTTAGACGCAAACACTTCCGGCCATGATGATTCACATTTAACTAACCACGATGCCGACGACGATGAGCAACTTCGTGGTAAGTTCCCTGACTATGCGAACCGAAAAGTGATGTGTGCTTTTTGTATGCGTCGATTTTGGTCCGCTGAAGATCTCAGACGTCACATGCGCACTCATACTGGAGAGCGGCCATTTTCTTGCGATGTATGCAGCAGAAGGTTTACTTTAAAGCACAGCATGTTGCGGCATCGGAAGAAGCACAACATGGCCGCCAACTTACTGGAAGATGGTATTTTGGCAAGCGGAGACGAAGAAGCAAATCCTTCTCAAATAAATTATGACAAATTTgctaaaattaacaataataataatttagtgcCTGGAAATCCAGCAAGAAGTAAGCAAGAAAAGTCAAGCAGTGAAGATTCCGAAGGAACAGAAGGAAATGATTTGATTGGAAATCTGCTTGGAATTAGAGATAAATCAATAATTGACCAAGTATTGGTGTCGTCAGCTGATGATGCCGCCAAACTATTGGGTGTGAATAATGGCCAAGAGTAA
Protein Sequence: MRGTASPSSTPPGPGPHANSPQPASPAVINMDDSLNSTKESQRKNETEDSMLESSSAVSDNLHDTISTHDSDVEPMDISNKTTTTVDSDNQSDCSSPSNPTKYFCPICDITLTSQHEFTLHIRSHNNDNEIVSDKGYTCRICSKVLSSSSSLDRHVLVHSGERPFRCKICSVTFTTNGNMHRHMRTHSQKAGENYESDASTDSNTSVNSNGKSRKRRLEFNNNKLVDNSNKRKSDCFINEEDDNYMHRRKSKNFNNNNNISETQKYHCPVCDRDNFASLNVLETHLEDHHPDFEVKCVSCNLSFKNHRALNLHRDMVHHTEQQHNINNKNIKNAHIGFNDLTFVDFSSNKFAQIARFECERNLHKPITGQKFICEKCSRAFPCSSALEMHQDECCKNKHTRETDYPTDLSRKSDDMQRENFFARLDLQNKSGSISPVSPVVVEEPKIPESRPQIKPTSDSKDLADIQSILSMTSNGSLLQHLRTKPPTELLQLPTETSRNSEQHNEEETQDAFAAEFRKMKLRGEFPCRLCTAVFPNLRALKGHNRAHLTGTGNSGPYRCNMCPHSSTDKAALIRHMRTHNGDRPYECSLCNYAFTTKANCERHLRNRHSKVTREEVKKSIIYHPSEDPTNDEINKINSARNEIKHSYPSISNEEDLRSRESLEHKNIVIPGLSIPSTLINKGLTINRPIVPDHHLNKELPPVKDPKVLPKEDKIDFPYPKKHTFNYPPDLPDKIKENLIHTKIQVKNLNDLKLKQIPDYEIHSDEEESNTNMSSSFDEYPKSSVEHPMDLSMDVLDLSKKKESPSPKIDNEPQDFTKKTLESTPNVPPTPSAAQMLLAQQFLKHPYMTQLSQFYQNPALFPNLNLQQNLFPFFFPPPFLNPQEVKERMLRLQLSGGTMISEFPPVPPNGIQSFNQDLPNIPEMKYSLAKAEDDKTPLHINTQLAENVSKLHSPKPQQKTPDMIHSPNSVKMVIKNGVLMPKQKQRRYRTERPFSCEHCSARFTLRSNMERHIKQQHPQFWSQRQRAGLSGAGRKPISATATNMQNTKPPFYDLNIPNYDMHIPKIQDSLVTETKDKDINIQHHVPISQHVKYALLAQQLKARNIENNSLISKDRLPQDDDEDALIIDEENDEEKPKPESKESTEIRIDDNKPKSLEEKMLELRQMREKEIKNNEKLHLNVSETGLLKLIKPEEAGQDLVPVSRLLDNAVSSQLPFREYFRREGEDIEAEGVSEEDEEGLVASGSTSEGNGSGSDENKSENETATTNEPGKKRSAYSLAPNRVSCPYCHRKFPWTSSLRRHVLTHTGQKPFKCSQCPLLFTTKSNCDRHLLRKHGNATNPQSESSNNNNNSSQNYMMRNVPERPYKCSSCPSSTFSTLSNLKKHMSCKHTIVSSSADSLKEDNRPPSREYESLVSSEDERVNKDNKSDWENQISHSKIPIPNNDQTNTIQTADLPFKCHLCDSSYAERQDALDHIRDAHVSEYELLMAKGALDANTSGHDDSHLTNHDADDDEQLRGKFPDYANRKVMCAFCMRRFWSAEDLRRHMRTHTGERPFSCDVCSRRFTLKHSMLRHRKKHNMAANLLEDGILASGDEEANPSQINYDKFAKINNNNNLVPGNPARSKQEKSSSEDSEGTEGNDLIGNLLGIRDKSIIDQVLVSSADDAAKLLGVNNGQE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01275656;
90% Identity: iTF_00769110;
80% Identity: -