Basic Information

Insect: Harpalus rufipes
Gene Symbol: RREB1
Assembly: GCA_951394225.1
Location: OX596280.1:2016792-2023176[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 8.8e-05 0.019 17.2 1.2 1 23 71 93 71 93 0.98

2 15 0.00017 0.036 16.4 0.3 1 23 105 127 105 127 0.98

3 15 4.2e-06 0.00091 21.4 4.0 1 23 133 155 133 155 0.99

4 15 0.07 15 8.1 2.9 2 23 264 286 263 287 0.94

5 15 0.17 36 6.9 0.3 1 20 340 359 340 361 0.94

6 15 0.082 18 7.9 0.1 1 23 489 511 489 511 0.96

7 15 3.6e-06 0.00079 21.6 1.2 1 23 521 543 521 543 0.99

8 15 0.00094 0.21 14.0 3.1 1 23 549 572 549 572 0.97

9 15 0.00081 0.18 14.2 2.8 1 23 950 973 950 973 0.96

10 15 0.0012 0.27 13.6 1.4 2 23 1239 1260 1238 1260 0.97

11 15 0.1 22 7.6 4.2 1 23 1266 1289 1266 1289 0.96

12 15 0.12 27 7.3 4.0 1 20 1320 1340 1320 1344 0.94

13 15 0.2 44 6.6 0.7 1 23 1411 1434 1411 1434 0.95

14 15 0.019 4.1 9.9 0.5 3 23 1484 1504 1482 1504 0.93

15 15 0.0085 1.8 11.0 5.5 1 23 1510 1532 1510 1532 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	8.8e-05	0.019	17.2	1.2	1	23	71	93	71	93	0.98
2	15	0.00017	0.036	16.4	0.3	1	23	105	127	105	127	0.98
3	15	4.2e-06	0.00091	21.4	4.0	1	23	133	155	133	155	0.99
4	15	0.07	15	8.1	2.9	2	23	264	286	263	287	0.94
5	15	0.17	36	6.9	0.3	1	20	340	359	340	361	0.94
6	15	0.082	18	7.9	0.1	1	23	489	511	489	511	0.96
7	15	3.6e-06	0.00079	21.6	1.2	1	23	521	543	521	543	0.99
8	15	0.00094	0.21	14.0	3.1	1	23	549	572	549	572	0.97
9	15	0.00081	0.18	14.2	2.8	1	23	950	973	950	973	0.96
10	15	0.0012	0.27	13.6	1.4	2	23	1239	1260	1238	1260	0.97
11	15	0.1	22	7.6	4.2	1	23	1266	1289	1266	1289	0.96
12	15	0.12	27	7.3	4.0	1	20	1320	1340	1320	1344	0.94
13	15	0.2	44	6.6	0.7	1	23	1411	1434	1411	1434	0.95
14	15	0.019	4.1	9.9	0.5	3	23	1484	1504	1482	1504	0.93
15	15	0.0085	1.8	11.0	5.5	1	23	1510	1532	1510	1532	0.98

Sequence Information

Coding Sequence: ATGGATGATTCGCTCAACAGTACCAAAGATAGCCAAAGAAAAAACGACACAGAGGACAGCATGCTCGAAAGCAGTTCTGCTGACAACCTTCACGATACCATTTCCACCCATGACTCTGACGTAGAGCCCATGGACATCAGCAATAAGACCACAACAACCGTAGACAGCGATAATCAAAGCGACTGCAGTTCACCCAGCAATCCCACGAAGTACTTCTGTCCAATATGCGATATAACTCTCACTTCTCAACACGAATTTACCCTCCACATTCGCTCTCACAACAACGACAATGAAATAATATCAGATAAGGGGTACACGTGTAGGATTTGCTCAAAAGTGCTGAGCTCTAGCTCTAGTTTGGATAGGCACGTACTTGTTCATAGTGGGGAACGACCATTTCGCTGTAAAATTTGTTCTGTGACTTTTACCACCAATGGAAATATGCATAGACATATGCGGACACACTCACAAAAGACTGGAGAGAATTATGAATCTGACGCAAGTACCGATAGTAATACTAGTGTTAATTCTAACGGGAAATCTAGAAAACGTAgattagaatttaataataacaaattagtaGACAACAgcaataaaagaaaatcagaCTGTTTTATTAACGAAGAAGATGACAACTACATGCATCGAAGAAAATCAAAAaactataacaataataataacattagtgaaacacaaaaatatcattgCCCTGTTTGTGACAGGGATAACTTTGCATCTTTAAATGTTCTGGAAACCCATCTTGAAGACCACCATCCAGATTTTGAAGTTAAATGTGTATCATGTAATCTCAGCTTCAAAAACCACCGTGCCTTGAATCTTCATAGAGATATGGTGCACCATACAGAAAAACAACATAACatcaacaataaaaacattaaaaacgcTCATATCGGTTTTAACGATTTGACGTTCGTTGATTTTTCTAGTAATAAATTTGCACAAATAGCGCGGTTTGAATGTGAAAGAAATTTACATAAACCTATAACAGGACAGAagtttatttgtgaaaaatgctCCAGAGCTTTTCCTTGTTCTAGTGCGTTAGAAATGCATCAAGATGAGTGctgcaaaaataaacaaacaactgaATATCCAACAGATTTATCAAGAAAATCAGACGACATGCAAAGGGAAAACTTTTTTGCTCGTTTGGATTTGCAAAACAAATCTGGAAGCATTTCTCCAGTTTCTCCAGTTGTTGTAGAACCAAAAATTCCAGAAATTCTGCAAATTAAAACTAGTTCCGACTCCAAAGATTTGGCTGATATTCAGTCTATTTTATCCATGACATCCAATGGAAGTTTGCTACAACACTTACGAACGAAACCAACTGAATTATTACAGTTACCAACGGAAACATCCAGAAATTCAGAGCAACATAATGAAGAAGAAACTCAGGATGCATTTGCAGCAGAATTTAGAAAGATGAAACTACGAGGTGAATTTCCTTGCCGATTATGTACAGCAGTTTTTCCTAATCTTCGCGCACTAAAAGGCCACAATCGTGCGCACTTGACTGGTACGGGTAATTCTGGTCCATATCGTTGCAACATGTGTCCGCACAGCTCTACAGATAAAGCTGCTTTGATCAGACATATGCGTACACACAATGGCGATAGGCCTTACGAATGCTCTCTTTGTAATTATGCTTTTACTACGAAAGCAAACTGCGAAAGACATTTGAGGAATAGACACTCAAAAGTTACCAGAGAAGaagttaaaaaatctattatttatcATCCATCTGAAGATCCAACGAATGATGAAATTAATAAGATTAATTCGGCTCGAAATGAAATCAAACATAGCTATCCCAGCATCTCGAATGAGGAAGATCTTCGGTCAAGAGATtctttagataaaaatattgtcaTACCTGGTCTCTCTATACCAACGACTTTAATTAATAAAGGATTAACTATAAACCGACCAATCGTTCCTGAACATAAAGAGTTACCTCAAAAAGATACAAAAGTATTACCAAAAGAAGATAAAATAGATTTCCCGTATCCTAAGAAACACACTTTCAACTATCATCCCGATTTGCCTGACAAAATCAAAGAAAACTTGATCCATACAAAAATACAAGTTAAAAACCTGAACgatttgaaattgaaacaaatccCGGACTATGAAATTCATTCCGATGAAGAAGAATCAAATACTAACATGTCTTCAAGTTTTGAAGATTATCCCAAATCTGTTGAACACCCAATGGATTTGAGTATGGACGTATTAGATTTGAGTAAAAAAAAAGAATCTCCAAGTCCTAAAATAGATAACGAACCTCATGATTTTACCAAAAAAACTTTAGAATCCGCTCCAGCAGTTCCGCCAACTCCTTCAGCAGCGCAAATGCTACTTGCGCAACAATTTCTCAAGCATCCGTACATGACGCAATTGTCACAATTTTATCAAAATCCTGCTCTGTTtcctaatttaaatttacaacaaaatctATTTCCATTTTTCTTTCCGCCTCCTTTTTTAAACCCCCAAGAAGTGAAAGAAAGAATGCTTCGGCTTCAATTAAGTGGAGGAACAATGATTAGTGAATTCCCTCCTGTACCACCAAATGGAATATCTTTCAATCAAGATTTGCCAAATATTCCAGAACTGAAATACTCTTTGGCAAAAGCAGAAGAAGATAAAACTCCTCTACATATAAACACACAATTAGCTGAAAATGTTAGCAAGTTACATTCGCCTAAACCACAACAAAAGACTCCAGATATGATTCATAGTCCAAATTCTGTCAAAATGGTTATTAAAAATGGAGTTTTGATgccaaaacaaaaacaacgacGGTACAGAACAGAAAGACCTTTTTCGTGCGAACATTGCTCAGCTAGATTTACACTAAGATCGAATATGGAACGACATATCAAACAACAACATCCACAATTTTGGTCGCAAAGACAACGCGCTGGTTTAAGCGGCGCCGGACGGAAACCCATCAGCGCAACTGCTACCAACATGCAAAATAACACCAAACCACCTTTCTACGACTTAAATATCCCTAACTATGACATGCACATACCAAAGATTCAAGACTCTATAGTCACTGAAACCAAAGATAAAGACAACATTCAAAATCATGTACATATATCGCAACATGTTAAATACGCTCTTCTAGCTCAGCAATTAAAAGCTAGAAACATCGAAAACAATTCATTAATTAGTAAAGACCGCTTGCCTCAAGATGACGATGAAGATGCACTAATAATCGACGAAGAAAACGACGAAGAAAAACCTAAACCTGAATCCAAAGAATCAACAGAAATAAGAATCGACGACAACAAACCAAAATCTCTGGAAGAGAAAATGTTAGAGCTTCGCCAAATGCGtgagaaagaaataaaaaatgaaaaattgcacATGAATGTTGCGGAAACTGGTCTGTTAAAGTTAATAAAGCCTGAAGAAGCTGGACAAGATCTAGTACCAGTTTCTAGACTGCTGGATAATGCGGTTAGTTCTCGGTTACCATTTGGGGAATATTTTCGCCGCGAAGGGGAGGACATTGAAGCTGAAGGTGTCAGTGAAGAAGATGAAGAAGGCTTAGTTGCTAGTGGCAGTACGAGTGAGGGAAATGGATCTGGTAGCGATGAAAATAAatCTGAAAACGAAACTGCCACGACCAACGAACCCGGAAAGAAAAGATCTGCTTACTCTTTGGCGCCAAACCGAGTAAGTTGCCCATACTGCCATCGCAAATTTCCATGGACTTCATCTCTCCGACGCCACGTCTTAACTCACACTGGTCAAAAACCATTCAAATGTTCCCAATGTCCTCTTTTATTCACAACAAAATCAAACTGTGATCGGCATTTACTTCGAAAACACGGAAACACCACAAACACCCAAACTGATTCGTcgaataataacaacaacagcAGTCAGAATTATATGATGAGAAATGTTCCAGAAAGACCTTACAAATGCTCAAGTTGTCCTAGTTCCACCTTTTCTACTTTGAGTAATCTCAAGAAGCACATGTCTTGCAAACACACAATTGTGTCTTCAAGCGCGGATTCTTTGAAAGAAGATACCAGACCACCTAGTAGAGAATATGAAAGTTTGGTTAGTTCTGAAGACGAACGAGTCAACAAAGACAACAGAAGTGATTGGGAAAATCAGATTTCACATTCCAAAATACCAATTTCTAACAACGATCAGACCAATACGATACAAACAGCTGATTTGCCATTCAAATGCCATTTATGTGACAGTTCTTACGCCGAACGACAAGATGCTTTAGATCACATTCGAGACACACATGTATctgaatatgaattattaatggCAAAAGGTGCTTTAGACGCGAACACTTCCGGCCACGACGACTCACACTTAACTAACCATGATGCCGACGACGACGAACAACTCCGCGGTAAATTCCCCGACTATGCGAACCGAAAAGTAATGTGTGCATTCTGTATGCGTCGATTTTGGTCCGCGGAAGATCTCCGACGTCATATGAGAACACACACCGGCGAGCGGCCATTTTCTTGCGATGTTTGTAGCAGAAGATTTACTTTAAAACACAGCATGTTGCGGCACCGGAAGAAGCACAACATGGCTGCCAACTTACTAGAAGATGGTATTTTAGCCAGCGGGGATGAAGAAGCAAACCCATCCCAAATAAATTATGACAAATttgctaaaattaataataataataatttagtgcCTGAAAATCCAGGAAGAAGAAAGCATGAGAAATCGAGTGGCGAAGATTCCGAAGGGACAGAAGGTAATGATTTGATTGGAAATTTGCTTGGAATTAGAGATAAATCAATAATTGACCAAGTGTTGGTGTCGTCAGCTGATGATGCCGCCAAACTGTTGGGTGTGAATAATGGCCAAGAGTAA
Protein Sequence: MDDSLNSTKDSQRKNDTEDSMLESSSADNLHDTISTHDSDVEPMDISNKTTTTVDSDNQSDCSSPSNPTKYFCPICDITLTSQHEFTLHIRSHNNDNEIISDKGYTCRICSKVLSSSSSLDRHVLVHSGERPFRCKICSVTFTTNGNMHRHMRTHSQKTGENYESDASTDSNTSVNSNGKSRKRRLEFNNNKLVDNSNKRKSDCFINEEDDNYMHRRKSKNYNNNNNISETQKYHCPVCDRDNFASLNVLETHLEDHHPDFEVKCVSCNLSFKNHRALNLHRDMVHHTEKQHNINNKNIKNAHIGFNDLTFVDFSSNKFAQIARFECERNLHKPITGQKFICEKCSRAFPCSSALEMHQDECCKNKQTTEYPTDLSRKSDDMQRENFFARLDLQNKSGSISPVSPVVVEPKIPEILQIKTSSDSKDLADIQSILSMTSNGSLLQHLRTKPTELLQLPTETSRNSEQHNEEETQDAFAAEFRKMKLRGEFPCRLCTAVFPNLRALKGHNRAHLTGTGNSGPYRCNMCPHSSTDKAALIRHMRTHNGDRPYECSLCNYAFTTKANCERHLRNRHSKVTREEVKKSIIYHPSEDPTNDEINKINSARNEIKHSYPSISNEEDLRSRDSLDKNIVIPGLSIPTTLINKGLTINRPIVPEHKELPQKDTKVLPKEDKIDFPYPKKHTFNYHPDLPDKIKENLIHTKIQVKNLNDLKLKQIPDYEIHSDEEESNTNMSSSFEDYPKSVEHPMDLSMDVLDLSKKKESPSPKIDNEPHDFTKKTLESAPAVPPTPSAAQMLLAQQFLKHPYMTQLSQFYQNPALFPNLNLQQNLFPFFFPPPFLNPQEVKERMLRLQLSGGTMISEFPPVPPNGISFNQDLPNIPELKYSLAKAEEDKTPLHINTQLAENVSKLHSPKPQQKTPDMIHSPNSVKMVIKNGVLMPKQKQRRYRTERPFSCEHCSARFTLRSNMERHIKQQHPQFWSQRQRAGLSGAGRKPISATATNMQNNTKPPFYDLNIPNYDMHIPKIQDSIVTETKDKDNIQNHVHISQHVKYALLAQQLKARNIENNSLISKDRLPQDDDEDALIIDEENDEEKPKPESKESTEIRIDDNKPKSLEEKMLELRQMREKEIKNEKLHMNVAETGLLKLIKPEEAGQDLVPVSRLLDNAVSSRLPFGEYFRREGEDIEAEGVSEEDEEGLVASGSTSEGNGSGSDENKSENETATTNEPGKKRSAYSLAPNRVSCPYCHRKFPWTSSLRRHVLTHTGQKPFKCSQCPLLFTTKSNCDRHLLRKHGNTTNTQTDSSNNNNNSSQNYMMRNVPERPYKCSSCPSSTFSTLSNLKKHMSCKHTIVSSSADSLKEDTRPPSREYESLVSSEDERVNKDNRSDWENQISHSKIPISNNDQTNTIQTADLPFKCHLCDSSYAERQDALDHIRDTHVSEYELLMAKGALDANTSGHDDSHLTNHDADDDEQLRGKFPDYANRKVMCAFCMRRFWSAEDLRRHMRTHTGERPFSCDVCSRRFTLKHSMLRHRKKHNMAANLLEDGILASGDEEANPSQINYDKFAKINNNNNLVPENPGRRKHEKSSGEDSEGTEGNDLIGNLLGIRDKSIIDQVLVSSADDAAKLLGVNNGQE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01275656;
90% Identity: iTF_00767529; iTF_01105034;
80% Identity: -