Pcha004164.1
Basic Information
- Insect
- Pogonus chalceus
- Gene Symbol
- -
- Assembly
- GCA_002278615.1
- Location
- NEEE01007539.1:11602-15995[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 3.6 3.2e+02 2.4 1.7 2 17 60 75 59 76 0.88 2 17 8.6e-06 0.00076 20.1 1.7 1 23 168 190 168 190 0.98 3 17 7.3e-07 6.4e-05 23.4 3.3 1 23 195 217 195 217 0.98 4 17 2e-05 0.0018 18.9 4.3 1 23 223 245 223 245 0.97 5 17 0.00014 0.012 16.2 0.5 1 21 251 271 251 272 0.94 6 17 7.5e-07 6.6e-05 23.4 0.2 1 23 279 301 279 301 0.97 7 17 6.8e-05 0.006 17.2 0.2 1 23 459 481 459 481 0.98 8 17 1.2e-07 1e-05 25.9 3.6 1 23 487 509 487 509 0.98 9 17 4.4e-07 3.9e-05 24.1 1.7 1 23 515 537 515 537 0.98 10 17 4.3e-05 0.0038 17.8 0.8 1 23 543 566 543 566 0.95 11 17 0.0015 0.13 13.0 1.0 1 23 578 600 578 600 0.98 12 17 0.00012 0.01 16.5 5.3 1 23 606 628 606 628 0.97 13 17 1.6e-06 0.00014 22.4 0.5 1 23 635 657 635 657 0.96 14 17 2e-06 0.00018 22.0 1.2 1 23 663 685 663 685 0.98 15 17 3e-07 2.6e-05 24.7 0.9 3 23 693 713 691 713 0.96 16 17 1.5e-05 0.0013 19.3 0.1 1 23 719 741 719 741 0.99 17 17 0.029 2.5 9.0 0.5 1 23 746 769 746 769 0.96
Sequence Information
- Coding Sequence
- ATGGAACATTtagaatatgattttaatcgTATTTGTCGTGCTTGTAAATGTGAATCTACGGATATGTGCTCAGTGTTTGAAAGAAACGAATCAACAGGGCGTAATGCCCGTTTTGACGAGATGCTAATGGCGTGTGCCTCTGTTCAGataacttCAGAAGATGGATTACCTGCATgcatttgtaaaaaatgtgtCAAATCATTAACAAGTGcttatgaatttaaacaacaatgtGAAACAACAGACACAAGTTTACGGGATTATCTCAAAGCAAAAggaataaaacaagaaaatgctcaatcaaatcaaaacaatCCTGACCAAGAACTTCACAATCAATTACTTGATTTTAGCGCTATGTACAATGAATTACAAGCAAAAGTCCAAGAAGCAGCTAGTGGTGTTAAAGTTGATCCAGATTTTGTACCCACCATAGATTGTGAAGCGCAACTAAAAAACAGTCGTGATTATgttgaaattattgataatgataaaataatatttacgtgCAATACgtgtaataaagtattttatacgttAGAAGGTTTAAAAAGTCATAAACGTGTCCATACCGGTGAAATGTACAAatgtaatatttgtaataaagaatatacTCGACAAAATCATTTACAAAGACATTTAGCATCGCATGTCCGTAGAAAAGTccatatatgtaaaatatgtaataaaacacTAACAAGACTCGAACATTTAAAGCGCCATTTAATAActcatatgaaaaataaaccgTTTCAATGTGAAATGTGTAAAAGAGGCTTCAACCGCGCGGAGCATTTAGTAAATCATGCCAAACGGTGTAAAGgagataaaatttatgcatGTGAAGTTTGTAATAAAGGTTTCACGCGAACTGATAGTCTCGAAGTTCATATGCGATTGCATGAAAACAAAGCACCAATTCTTCCGACTTTAGAAACTTTAGATAATATACACGaacattatattgaaatagatGATTTCTCTGGTAAATCTGAATCGGAACATTCGGACCCTGATAATTTTTCTGACCATGATGACGGCGCAGATGATAATCAAGATTGTTTTGAACCCCAAGttgatattttagaaaatgcagATGAAGTTAAAATTGAACCAAGTCGATCTGATCAAGCGACAGATGCGGAAGCTTTTATTGAAGCTTTAACGAAAAATGAGAAAAACGAAGAGAATTTCgatgaaaatgataataatgaaGATAGTGATAGTATCCATTCGGAATATTTACCAAATAGAATTAATAGACCAAAAAGAAAACGGGGACGGCCTAGAAAACATCCAATAATTTCTTCAACGAAATTAAAACGCGGcagaaaaccaaaaataaaggaagaaaaaattgaagaaatcgGTGAATTTCCATGTACGGACTGTAACAAAGTTTTATCAACTGCAACTGGATTAGAAATTCATAGTAGGAAACACAGCGGATTGAATCTATATACTTGTGaagtatgtaataaaaaatttactagaTCTAATCATCTTAAACGTCACATGATCGTACATTCTGAACATAAACCTTACACTTGTACTATTTGTCCAAAGGCATTTTCACGTCGAGATCATATGGCGCAACACATGAAACTACACACAAcgttaaaagaatttgaatgCGAAATTTGTAAACGACCGTTCGCTCGTGAAGAACATCTAGCAAAACATAAAGCTTCCAAACATAATATCGGCgtgaaaataatgaatgagaagaaatttaaatgttcaatATGTCTGAAAGGGTTTACTACTGAAAAATATAGAGATGTTCACATGCGTGGACATTCAGgagaaaagaaatataactGTAAAACATGTGATAAAACGTTCCTTTCTAAATCACATTTAACTGAGCATATGAAATTCCATAATGAACATTCGAAGAAGTTCTTATGTTCAGAATGCGGACAAAGATTTATAAGAAACGATTATTTAGTTATACATATGAGAAGACACAGAGGAGAGAAGccatttaaatgcaaatattgtgGAAAAggtTTTCCACGCACAACTGATTTAACTGTTCATGAACGTTATCATACCGGAGAAAAAACACATCTTTGTACTATTTGTGGTAGAGGATTTGGCAgggCATATAATTTAACAGTACATATGCGTACTCACACCGGCGAAAAACCATATCAATGCACATATTGCGATGCAGCTTTCGCTCAAGGAAACGACTTGAAAGCTCATGTTCGTAGACATACCGGAGAGAGATTTCAATGCGATATTTGTACAGAAAGTTTCCTTATGGGTTACTTGCTCACTCAGCATAAAAGAAGTGTGCATGGCTTGAATGTGGTGTCTAATATAAGAAGACTGCAACCATTCCCACCCCCACAGCCACCAAATCAGCCTTTACCTCAAACAATACAGTTACCGCCCGTCACCGTCCCCGTACAATTATTACCCCAAGTACCAGTTGTAGTACCATCGGCCGTCGTTGTACAGCCGACAGTTGTACAAACTGTTGTTGCAGCAGCTACTTTACAACCAACCCAATCGCAACCTTCCCTGGTCGAGTGA
- Protein Sequence
- MEHLEYDFNRICRACKCESTDMCSVFERNESTGRNARFDEMLMACASVQITSEDGLPACICKKCVKSLTSAYEFKQQCETTDTSLRDYLKAKGIKQENAQSNQNNPDQELHNQLLDFSAMYNELQAKVQEAASGVKVDPDFVPTIDCEAQLKNSRDYVEIIDNDKIIFTCNTCNKVFYTLEGLKSHKRVHTGEMYKCNICNKEYTRQNHLQRHLASHVRRKVHICKICNKTLTRLEHLKRHLITHMKNKPFQCEMCKRGFNRAEHLVNHAKRCKGDKIYACEVCNKGFTRTDSLEVHMRLHENKAPILPTLETLDNIHEHYIEIDDFSGKSESEHSDPDNFSDHDDGADDNQDCFEPQVDILENADEVKIEPSRSDQATDAEAFIEALTKNEKNEENFDENDNNEDSDSIHSEYLPNRINRPKRKRGRPRKHPIISSTKLKRGRKPKIKEEKIEEIGEFPCTDCNKVLSTATGLEIHSRKHSGLNLYTCEVCNKKFTRSNHLKRHMIVHSEHKPYTCTICPKAFSRRDHMAQHMKLHTTLKEFECEICKRPFAREEHLAKHKASKHNIGVKIMNEKKFKCSICLKGFTTEKYRDVHMRGHSGEKKYNCKTCDKTFLSKSHLTEHMKFHNEHSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHVRRHTGERFQCDICTESFLMGYLLTQHKRSVHGLNVVSNIRRLQPFPPPQPPNQPLPQTIQLPPVTVPVQLLPQVPVVVPSAVVVQPTVVQTVVAAATLQPTQSQPSLVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00873224; iTF_01275571; iTF_00029525; iTF_01226011; iTF_00470141; iTF_01104928; iTF_00769003; iTF_00767416;
- 90% Identity
- -
- 80% Identity
- -